Trait: gastritis

Experimental Factor Ontology (EFO) Information
Identifier EFO_0000217
Description Inflammation of the stomach. [NCIT: C26780]
Trait category
Digestive system disorder
Synonyms 36 synonyms
  • Erosive Gastritis
  • Erosive gastropathy (disorder)
  • GASTRITIS HEMORRHAGIC
  • Gastric catarrh
  • Gastritides
  • Gastritis
  • Gastritis (disorder)
  • Gastritis [Ambiguous]
  • Gastritis unspecified
  • Gastritis unspecified (disorder)
  • Gastritis, NOS
  • Hemorrhagic Gastritis
  • Idiopathic erosive/hemorrhagic gastritis (disorder)
  • Other specified gastritis
  • Other specified gastritis (disorder)
  • Other specified gastritis NOS (disorder)
  • Other specified gastritis, with hemorrhage
  • Other specified gastritis, without mention of hemorrhage
  • active gastritis
  • acute gastric mucosal erosion
  • acute gastric mucosal erosion (disorder)
  • acute gastritis
  • acute gastritis (disorder)
  • acute gastritis with hemorrhage
  • acute gastritis without mention of hemorrhage
  • acute gastritis, with hemorrhage
  • acute gastritis, without mention of hemorrhage
  • acute haemorrhagic gastritis
  • acute hemorrhagic gastritis (disorder)
  • acute hemorrhagic gastritis [dup] (disorder)
  • erosive gastritis
  • erosive gastropathy
  • gastritis
  • gastritis (disease)
  • inflammation of stomach
  • stomach inflammation
Mapped terms 18 mapped terms
  • DOID:4029
  • HP:0005263
  • ICD10:K29
  • ICD9:535.0
  • ICD9:535.00
  • ICD9:535.01
  • ICD9:535.4
  • ICD9:535.40
  • ICD9:535.41
  • MESH:D005756
  • MONDO:0004966
  • MeSH:D005756
  • MedDRA:10017853
  • NCIT:C26780
  • NCIt:C26780
  • SCTID:4556007
  • SNOMEDCT:4556007
  • UMLS:C0017152

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004470
(disease.K29.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 K29 (Gastritis and duodenitis) gastritis 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004470/ScoringFiles/PGS004470.txt.gz
PGS004540
(meta.K29.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 K29 (Gastritis and duodenitis) gastritis 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004540/ScoringFiles/PGS004540.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM020585 PGS004470
(disease.K29.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: K29 (Gastritis and duodenitis) OR: 1.14876 — — — —
PPM020655 PGS004540
(meta.K29.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: K29 (Gastritis and duodenitis) OR: 1.22886 — — — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011364 — — 56,192 individuals — European — UKB —