Trait: Nasal Cavity Polyp

Experimental Factor Ontology (EFO) Information
Identifier EFO_1000391
Description A soft and painless polypoid mass that arises from the mucosa in the nasal cavity. It is usually the result of an inflammatory process. It may recur following surgical resection. [NCIT: C3256]
Trait category
Other disease
Synonyms 4 synonyms
  • nasal cavity polyp
  • nasal polyp
  • polyp of nasal cavity
  • polyp of the nasal cavity
Mapped terms 12 mapped terms
  • ICD10:J33
  • ICD9:471.0
  • ICD9:471.9
  • MESH:D009298
  • MONDO:0006314
  • MedDRA:10028754
  • MedDRA:10028756
  • MedDRA:10036138
  • NCIT:C3256
  • NCIt:C3256
  • SCTID:52756005
  • UMLS:C0027430

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Multi-ancestry (including European)
Multi-ancestry (excluding European)
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South Asian
Additional Asian Ancestries
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Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004465
(disease.J33.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 J33 (Nasal polyp) Nasal Cavity Polyp 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004465/ScoringFiles/PGS004465.txt.gz
PGS004535
(meta.J33.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 J33 (Nasal polyp) Nasal Cavity Polyp 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004535/ScoringFiles/PGS004535.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM020580 PGS004465
(disease.J33.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: J33 (Nasal polyp) OR: 1.3496 — — — —
PPM020650 PGS004535
(meta.J33.score)
 PSS011364|
European Ancestry|
56,192 individuals
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Reported Trait: J33 (Nasal polyp) OR: 1.60067 — — — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011364 — — 56,192 individuals — European — UKB —