Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS019308
(TPMI_523.1_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Gingivitis gingivitis 983,793
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019308/ScoringFiles/PGS019308.txt.gz
PGS019309
(TPMI_523.1_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Gingivitis gingivitis 989,009
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019309/ScoringFiles/PGS019309.txt.gz
PGS019310
(TPMI_523.3_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 800,498
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019310/ScoringFiles/PGS019310.txt.gz
PGS019311
(TPMI_523.3_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 939,880
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019311/ScoringFiles/PGS019311.txt.gz
PGS019312
(TPMI_523.3_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 507,697
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019312/ScoringFiles/PGS019312.txt.gz
PGS019313
(TPMI_523.3_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 983,817
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019313/ScoringFiles/PGS019313.txt.gz
PGS019314
(TPMI_523.3_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Periodontitis acute or chronic acute pericementitis 934,116
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019314/ScoringFiles/PGS019314.txt.gz
PGS019315
(TPMI_526_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diseases of the jaws jaw disease 477,467
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019315/ScoringFiles/PGS019315.txt.gz
PGS019316
(TPMI_526_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diseases of the jaws jaw disease 939,803
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019316/ScoringFiles/PGS019316.txt.gz
PGS019317
(TPMI_526_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diseases of the jaws jaw disease 25,953
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019317/ScoringFiles/PGS019317.txt.gz
PGS019318
(TPMI_526_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diseases of the jaws jaw disease 983,750
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019318/ScoringFiles/PGS019318.txt.gz
PGS019319
(TPMI_526_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Diseases of the jaws jaw disease 1,003,540
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019319/ScoringFiles/PGS019319.txt.gz
PGS019320
(TPMI_526.4_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Temporomandibular joint disorders temporomandibular joint disorder 482,939
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019320/ScoringFiles/PGS019320.txt.gz
PGS019321
(TPMI_526.4_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Temporomandibular joint disorders temporomandibular joint disorder 939,803
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019321/ScoringFiles/PGS019321.txt.gz
PGS019322
(TPMI_526.4_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Temporomandibular joint disorders temporomandibular joint disorder 19,676
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019322/ScoringFiles/PGS019322.txt.gz
PGS019323
(TPMI_526.4_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Temporomandibular joint disorders temporomandibular joint disorder 983,748
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019323/ScoringFiles/PGS019323.txt.gz
PGS019324
(TPMI_526.4_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Temporomandibular joint disorders temporomandibular joint disorder 1,011,614
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019324/ScoringFiles/PGS019324.txt.gz
PGS019325
(TPMI_528.1_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Stomatitis and mucositis mucositis 724,006
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019325/ScoringFiles/PGS019325.txt.gz
PGS019326
(TPMI_528.1_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Stomatitis and mucositis mucositis 939,884
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019326/ScoringFiles/PGS019326.txt.gz
PGS019327
(TPMI_528.1_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Stomatitis and mucositis mucositis 9,831
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019327/ScoringFiles/PGS019327.txt.gz
PGS019328
(TPMI_528.1_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Stomatitis and mucositis mucositis 983,821
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019328/ScoringFiles/PGS019328.txt.gz
PGS019329
(TPMI_528.1_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Stomatitis and mucositis mucositis 953,174
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019329/ScoringFiles/PGS019329.txt.gz
PGS019330
(TPMI_531_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 461,945
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019330/ScoringFiles/PGS019330.txt.gz
PGS019331
(TPMI_531_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 939,893
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019331/ScoringFiles/PGS019331.txt.gz
PGS019332
(TPMI_531_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 24,193
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019332/ScoringFiles/PGS019332.txt.gz
PGS019333
(TPMI_531_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 983,826
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019333/ScoringFiles/PGS019333.txt.gz
PGS019334
(TPMI_531_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Peptic ulcer excl esophageal Peptic ulcer 933,417
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019334/ScoringFiles/PGS019334.txt.gz
PGS019335
(TPMI_531.3_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Duodenal ulcer duodenal ulcer 19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019335/ScoringFiles/PGS019335.txt.gz
PGS019336
(TPMI_531.3_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Duodenal ulcer duodenal ulcer 939,880
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019336/ScoringFiles/PGS019336.txt.gz
PGS019337
(TPMI_531.3_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Duodenal ulcer duodenal ulcer 21,469
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019337/ScoringFiles/PGS019337.txt.gz
PGS019338
(TPMI_531.3_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Duodenal ulcer duodenal ulcer 983,821
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019338/ScoringFiles/PGS019338.txt.gz
PGS019339
(TPMI_531.3_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Duodenal ulcer duodenal ulcer 966,134
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019339/ScoringFiles/PGS019339.txt.gz
PGS019340
(TPMI_550_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Abdominal hernia ventral hernia 10,749
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019340/ScoringFiles/PGS019340.txt.gz
PGS019341
(TPMI_550_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Abdominal hernia ventral hernia 328,473
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019341/ScoringFiles/PGS019341.txt.gz
PGS019342
(TPMI_550_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Abdominal hernia ventral hernia 20,055
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019342/ScoringFiles/PGS019342.txt.gz
PGS019343
(TPMI_550_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Abdominal hernia ventral hernia 983,829
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019343/ScoringFiles/PGS019343.txt.gz
PGS019344
(TPMI_550_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Abdominal hernia ventral hernia 1,002,973
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019344/ScoringFiles/PGS019344.txt.gz
PGS019345
(TPMI_550.1_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Inguinal hernia Inguinal hernia 8,309
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019345/ScoringFiles/PGS019345.txt.gz
PGS019346
(TPMI_550.1_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Inguinal hernia Inguinal hernia 360,178
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019346/ScoringFiles/PGS019346.txt.gz
PGS019347
(TPMI_550.1_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Inguinal hernia Inguinal hernia 133,309
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019347/ScoringFiles/PGS019347.txt.gz
PGS019348
(TPMI_550.1_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Inguinal hernia Inguinal hernia 983,786
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019348/ScoringFiles/PGS019348.txt.gz
PGS019349
(TPMI_550.1_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Inguinal hernia Inguinal hernia 1,030,620
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019349/ScoringFiles/PGS019349.txt.gz
PGS019350
(TPMI_565_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Anal and rectal conditions Rectal abscess 212,452
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019350/ScoringFiles/PGS019350.txt.gz
PGS019351
(TPMI_565_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Anal and rectal conditions Rectal abscess 939,887
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019351/ScoringFiles/PGS019351.txt.gz
PGS019352
(TPMI_565_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Anal and rectal conditions Rectal abscess 20,527
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019352/ScoringFiles/PGS019352.txt.gz
PGS019353
(TPMI_565_PRS-CS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Anal and rectal conditions Rectal abscess 983,824
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019353/ScoringFiles/PGS019353.txt.gz
PGS019354
(TPMI_565_SBayesR)
 PGP000835 |
Chen HH et al. Nature (2025)
 Anal and rectal conditions Rectal abscess 986,348
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019354/ScoringFiles/PGS019354.txt.gz
PGS019355
(TPMI_571_Lassosum2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Chronic liver disease and cirrhosis alcoholic liver cirrhosis 383
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019355/ScoringFiles/PGS019355.txt.gz
PGS019356
(TPMI_571_LDpred2)
 PGP000835 |
Chen HH et al. Nature (2025)
 Chronic liver disease and cirrhosis alcoholic liver cirrhosis 939,833
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019356/ScoringFiles/PGS019356.txt.gz
PGS019357
(TPMI_571_MegaPRS)
 PGP000835 |
Chen HH et al. Nature (2025)
 Chronic liver disease and cirrhosis alcoholic liver cirrhosis 53,187
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019357/ScoringFiles/PGS019357.txt.gz
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