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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
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Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS019369
(TPMI_571.51_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cirrhosis of liver without mention of alcohol
cirrhosis of liver
1,012,645
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019369/ScoringFiles/PGS019369.txt.gz
PGS019370
(TPMI_573_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of liver
liver disorder
98
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019370/ScoringFiles/PGS019370.txt.gz
PGS019371
(TPMI_573_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of liver
liver disorder
939,877
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019371/ScoringFiles/PGS019371.txt.gz
PGS019372
(TPMI_573_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of liver
liver disorder
37,901
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019372/ScoringFiles/PGS019372.txt.gz
PGS019373
(TPMI_573_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of liver
liver disorder
983,820
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019373/ScoringFiles/PGS019373.txt.gz
PGS019374
(TPMI_573_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of liver
liver disorder
481,850
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019374/ScoringFiles/PGS019374.txt.gz
PGS019375
(TPMI_573.7_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal results of function study of liver
abnormal result of function studies
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019375/ScoringFiles/PGS019375.txt.gz
PGS019376
(TPMI_573.7_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal results of function study of liver
abnormal result of function studies
128,701
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019376/ScoringFiles/PGS019376.txt.gz
PGS019377
(TPMI_573.7_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal results of function study of liver
abnormal result of function studies
31,056
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019377/ScoringFiles/PGS019377.txt.gz
PGS019378
(TPMI_573.7_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal results of function study of liver
abnormal result of function studies
983,814
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019378/ScoringFiles/PGS019378.txt.gz
PGS019379
(TPMI_573.7_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal results of function study of liver
abnormal result of function studies
977,478
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019379/ScoringFiles/PGS019379.txt.gz
PGS019380
(TPMI_574_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis and cholecystitis
cholelithiasis
828
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019380/ScoringFiles/PGS019380.txt.gz
PGS019381
(TPMI_574_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis and cholecystitis
cholelithiasis
301,092
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019381/ScoringFiles/PGS019381.txt.gz
PGS019382
(TPMI_574_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis and cholecystitis
cholelithiasis
504,100
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019382/ScoringFiles/PGS019382.txt.gz
PGS019383
(TPMI_574_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis and cholecystitis
cholelithiasis
983,827
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019383/ScoringFiles/PGS019383.txt.gz
PGS019384
(TPMI_574_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis and cholecystitis
cholelithiasis
961,215
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019384/ScoringFiles/PGS019384.txt.gz
PGS019385
(TPMI_574.1_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis
cholelithiasis
822
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019385/ScoringFiles/PGS019385.txt.gz
PGS019386
(TPMI_574.1_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis
cholelithiasis
299,623
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019386/ScoringFiles/PGS019386.txt.gz
PGS019387
(TPMI_574.1_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis
cholelithiasis
14,247
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019387/ScoringFiles/PGS019387.txt.gz
PGS019388
(TPMI_574.1_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis
cholelithiasis
983,827
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019388/ScoringFiles/PGS019388.txt.gz
PGS019389
(TPMI_574.1_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholelithiasis
cholelithiasis
950,200
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019389/ScoringFiles/PGS019389.txt.gz
PGS019390
(TPMI_575_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other biliary tract disease
biliary tract disorder
114
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019390/ScoringFiles/PGS019390.txt.gz
PGS019391
(TPMI_575_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other biliary tract disease
biliary tract disorder
939,893
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019391/ScoringFiles/PGS019391.txt.gz
PGS019392
(TPMI_575_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other biliary tract disease
biliary tract disorder
521,023
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019392/ScoringFiles/PGS019392.txt.gz
PGS019393
(TPMI_575_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other biliary tract disease
biliary tract disorder
983,826
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019393/ScoringFiles/PGS019393.txt.gz
PGS019394
(TPMI_575_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other biliary tract disease
biliary tract disorder
964,528
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019394/ScoringFiles/PGS019394.txt.gz
PGS019395
(TPMI_575.6_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholesterolosis of gallbladder
isolated agenesis of gallbladder
94
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019395/ScoringFiles/PGS019395.txt.gz
PGS019396
(TPMI_575.6_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholesterolosis of gallbladder
isolated agenesis of gallbladder
317,692
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019396/ScoringFiles/PGS019396.txt.gz
PGS019397
(TPMI_575.6_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholesterolosis of gallbladder
isolated agenesis of gallbladder
22,140
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019397/ScoringFiles/PGS019397.txt.gz
PGS019398
(TPMI_575.6_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholesterolosis of gallbladder
isolated agenesis of gallbladder
983,820
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019398/ScoringFiles/PGS019398.txt.gz
PGS019399
(TPMI_575.6_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Cholesterolosis of gallbladder
isolated agenesis of gallbladder
1,012,242
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019399/ScoringFiles/PGS019399.txt.gz
PGS019400
(TPMI_577_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Diseases of pancreas
pancreas disorder
664,654
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019400/ScoringFiles/PGS019400.txt.gz
PGS019401
(TPMI_577_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Diseases of pancreas
pancreas disorder
46,829
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019401/ScoringFiles/PGS019401.txt.gz
PGS019402
(TPMI_577_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Diseases of pancreas
pancreas disorder
557,676
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019402/ScoringFiles/PGS019402.txt.gz
PGS019403
(TPMI_577_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Diseases of pancreas
pancreas disorder
983,830
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019403/ScoringFiles/PGS019403.txt.gz
PGS019404
(TPMI_577_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Diseases of pancreas
pancreas disorder
981,644
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019404/ScoringFiles/PGS019404.txt.gz
PGS019405
(TPMI_580_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis nephrosis renal sclerosis
nephritis
114,961
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019405/ScoringFiles/PGS019405.txt.gz
PGS019406
(TPMI_580_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis nephrosis renal sclerosis
nephritis
394,908
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019406/ScoringFiles/PGS019406.txt.gz
PGS019407
(TPMI_580_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis nephrosis renal sclerosis
nephritis
41,521
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019407/ScoringFiles/PGS019407.txt.gz
PGS019408
(TPMI_580_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis nephrosis renal sclerosis
nephritis
983,816
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019408/ScoringFiles/PGS019408.txt.gz
PGS019409
(TPMI_580_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis nephrosis renal sclerosis
nephritis
976,759
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019409/ScoringFiles/PGS019409.txt.gz
PGS019410
(TPMI_580.3_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy without mention of glomerulonephritis
Nephropathy
238,700
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019410/ScoringFiles/PGS019410.txt.gz
PGS019411
(TPMI_580.3_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy without mention of glomerulonephritis
Nephropathy
939,838
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019411/ScoringFiles/PGS019411.txt.gz
PGS019412
(TPMI_580.3_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy without mention of glomerulonephritis
Nephropathy
55,104
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019412/ScoringFiles/PGS019412.txt.gz
PGS019413
(TPMI_580.3_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy without mention of glomerulonephritis
Nephropathy
983,793
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019413/ScoringFiles/PGS019413.txt.gz
PGS019414
(TPMI_580.3_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy without mention of glomerulonephritis
Nephropathy
998,548
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019414/ScoringFiles/PGS019414.txt.gz
PGS019415
(TPMI_580.31_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy in diseases classified elsewhere
Nephropathy
,
nephritis
222,116
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019415/ScoringFiles/PGS019415.txt.gz
PGS019416
(TPMI_580.31_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy in diseases classified elsewhere
Nephropathy
,
nephritis
939,830
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019416/ScoringFiles/PGS019416.txt.gz
PGS019417
(TPMI_580.31_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy in diseases classified elsewhere
Nephropathy
,
nephritis
54,233
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019417/ScoringFiles/PGS019417.txt.gz
PGS019418
(TPMI_580.31_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Nephritis and nephropathy in diseases classified elsewhere
Nephropathy
,
nephritis
983,787
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019418/ScoringFiles/PGS019418.txt.gz
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