Trait: monocyte count

Experimental Factor Ontology (EFO) Information
Identifier EFO_0005091
Description
  • quantification of monocytes in the blood
Trait category
Hematological measurement
Mapped term(s) 2 mapped terms
  • NCIt:C64823
  • SNOMEDCT:67776007

Associated Polygenic Score(s)

Polygenic Score (PGS) ID PGS Name PGS Publication (PGP) ID Reported Trait Number of Variants PGS Scoring File (FTP Link)
PGS000102 mono PGP000051
Xu Y et al. bioRxiv (2020)
Monocyte count 674 http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000102/ScoringFiles/PGS000102.txt.gz

PGS Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance Metric ID
(PPM ID)
Evaluated Score PGS Sample Set ID
(PSS ID)
Performance Source Trait PGS Effect Sizes
(per SD change)
PGS Classification Metrics Other Metrics Covariates Included in PGS Model PGS Performance: Other Relevant Information
PPM000236 PGS000102 (mono) PSS000167 PGP000051
Xu Y et al. (2020)
Reported Trait: Monocyte count Pearson correlation coefficent (r): 0.4644 age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment) UKB Testing Set - these samples were held out from Score Development (regression training) but overlap with the samples used for variant selection (GWAS)
PPM000237 PGS000102 (mono) PSS000141 PGP000051
Xu Y et al. (2020)
Reported Trait: Monocyte count Pearson correlation coefficent (r): 0.4319 age, sex, 10 PCs of ancestry, lifestyle factors (diet, smoking, alcohol consumption), technical covariates (the time between venepuncture and full blood cell analysis, seasonal effects, centre of sample collection, time dependent drift of equipment, systematic differences in equipment)

Evaluated Samples

PGS Sample Set ID
(PSS ID)
Detailed Phenotype Description Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000141 39,177 individuals,
50.0 % Male samples
Mean = 43.82 years
Range = [18.0, 76.4] years
European INTERVAL
PSS000167 80,799 individuals,
46.0 % Male samples
Mean = 57.23 years
Range = [39.66, 70.7] years
European UKB