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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Display options:
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Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS019469
(TPMI_593.2_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Microscopic hematuria
Microscopic hematuria
939,824
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019469/ScoringFiles/PGS019469.txt.gz
PGS019470
(TPMI_593.2_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Microscopic hematuria
Microscopic hematuria
40,557
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019470/ScoringFiles/PGS019470.txt.gz
PGS019471
(TPMI_593.2_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Microscopic hematuria
Microscopic hematuria
983,778
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019471/ScoringFiles/PGS019471.txt.gz
PGS019472
(TPMI_593.2_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Microscopic hematuria
Microscopic hematuria
1,005,807
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019472/ScoringFiles/PGS019472.txt.gz
PGS019473
(TPMI_594_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Urinary calculus
urinary volume
2,608
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019473/ScoringFiles/PGS019473.txt.gz
PGS019474
(TPMI_594_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Urinary calculus
urinary volume
939,830
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019474/ScoringFiles/PGS019474.txt.gz
PGS019475
(TPMI_594_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Urinary calculus
urinary volume
81,176
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019475/ScoringFiles/PGS019475.txt.gz
PGS019476
(TPMI_594_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Urinary calculus
urinary volume
983,782
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019476/ScoringFiles/PGS019476.txt.gz
PGS019477
(TPMI_594_PRSmix+)
PGP000835
|
Chen HH
et al.
Nature (2025)
Urinary calculus
urinary volume
1,071,465
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019477/ScoringFiles/PGS019477.txt.gz
PGS019478
(TPMI_594_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Urinary calculus
urinary volume
509,717
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019478/ScoringFiles/PGS019478.txt.gz
PGS019479
(TPMI_594.1_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of kidney
kidney volume
2,076
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019479/ScoringFiles/PGS019479.txt.gz
PGS019480
(TPMI_594.1_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of kidney
kidney volume
370,680
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019480/ScoringFiles/PGS019480.txt.gz
PGS019481
(TPMI_594.1_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of kidney
kidney volume
55,216
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019481/ScoringFiles/PGS019481.txt.gz
PGS019482
(TPMI_594.1_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of kidney
kidney volume
983,776
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019482/ScoringFiles/PGS019482.txt.gz
PGS019483
(TPMI_594.1_PRSmix+)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of kidney
kidney volume
1,041,148
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019483/ScoringFiles/PGS019483.txt.gz
PGS019484
(TPMI_594.1_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of kidney
kidney volume
993,811
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019484/ScoringFiles/PGS019484.txt.gz
PGS019485
(TPMI_594.3_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of ureter
ureterolithiasis
127,322
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019485/ScoringFiles/PGS019485.txt.gz
PGS019486
(TPMI_594.3_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of ureter
ureterolithiasis
939,826
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019486/ScoringFiles/PGS019486.txt.gz
PGS019487
(TPMI_594.3_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of ureter
ureterolithiasis
46,910
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019487/ScoringFiles/PGS019487.txt.gz
PGS019488
(TPMI_594.3_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of ureter
ureterolithiasis
983,779
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019488/ScoringFiles/PGS019488.txt.gz
PGS019489
(TPMI_594.3_PRSmix+)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of ureter
ureterolithiasis
1,070,068
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019489/ScoringFiles/PGS019489.txt.gz
PGS019490
(TPMI_594.3_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Calculus of ureter
ureterolithiasis
993,975
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019490/ScoringFiles/PGS019490.txt.gz
PGS019491
(TPMI_595_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Hydronephrosis
hydronephrosis
513,891
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019491/ScoringFiles/PGS019491.txt.gz
PGS019492
(TPMI_595_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Hydronephrosis
hydronephrosis
939,887
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019492/ScoringFiles/PGS019492.txt.gz
PGS019493
(TPMI_595_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Hydronephrosis
hydronephrosis
29,293
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019493/ScoringFiles/PGS019493.txt.gz
PGS019494
(TPMI_595_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Hydronephrosis
hydronephrosis
983,828
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019494/ScoringFiles/PGS019494.txt.gz
PGS019495
(TPMI_595_PRSmix+)
PGP000835
|
Chen HH
et al.
Nature (2025)
Hydronephrosis
hydronephrosis
1,070,950
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019495/ScoringFiles/PGS019495.txt.gz
PGS019496
(TPMI_595_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Hydronephrosis
hydronephrosis
998,183
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019496/ScoringFiles/PGS019496.txt.gz
PGS019497
(TPMI_597_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of urethra and urinary tract
urinary system disorder
76,371
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019497/ScoringFiles/PGS019497.txt.gz
PGS019498
(TPMI_597_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of urethra and urinary tract
urinary system disorder
939,885
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019498/ScoringFiles/PGS019498.txt.gz
PGS019499
(TPMI_597_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of urethra and urinary tract
urinary system disorder
513,693
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019499/ScoringFiles/PGS019499.txt.gz
PGS019500
(TPMI_597_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of urethra and urinary tract
urinary system disorder
983,826
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019500/ScoringFiles/PGS019500.txt.gz
PGS019501
(TPMI_597_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other disorders of urethra and urinary tract
urinary system disorder
875,558
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019501/ScoringFiles/PGS019501.txt.gz
PGS019502
(TPMI_598_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal findings on examination of urine
urinary system disorder
694,136
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019502/ScoringFiles/PGS019502.txt.gz
PGS019503
(TPMI_598_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal findings on examination of urine
urinary system disorder
939,897
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019503/ScoringFiles/PGS019503.txt.gz
PGS019504
(TPMI_598_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal findings on examination of urine
urinary system disorder
15,498
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019504/ScoringFiles/PGS019504.txt.gz
PGS019505
(TPMI_598_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal findings on examination of urine
urinary system disorder
983,833
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019505/ScoringFiles/PGS019505.txt.gz
PGS019506
(TPMI_598_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Abnormal findings on examination of urine
urinary system disorder
908,372
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019506/ScoringFiles/PGS019506.txt.gz
PGS019507
(TPMI_598.9_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other nonspecific findings on examination of urine
abnormal result of function studies
712,658
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019507/ScoringFiles/PGS019507.txt.gz
PGS019508
(TPMI_598.9_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other nonspecific findings on examination of urine
abnormal result of function studies
939,829
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019508/ScoringFiles/PGS019508.txt.gz
PGS019509
(TPMI_598.9_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other nonspecific findings on examination of urine
abnormal result of function studies
22,276
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019509/ScoringFiles/PGS019509.txt.gz
PGS019510
(TPMI_598.9_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other nonspecific findings on examination of urine
abnormal result of function studies
983,789
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019510/ScoringFiles/PGS019510.txt.gz
PGS019511
(TPMI_598.9_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Other nonspecific findings on examination of urine
abnormal result of function studies
905,790
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019511/ScoringFiles/PGS019511.txt.gz
PGS019512
(TPMI_599.2_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Retention of urine
Urinary retention
234
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019512/ScoringFiles/PGS019512.txt.gz
PGS019513
(TPMI_599.2_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Retention of urine
Urinary retention
105,295
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019513/ScoringFiles/PGS019513.txt.gz
PGS019514
(TPMI_599.2_MegaPRS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Retention of urine
Urinary retention
555,975
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019514/ScoringFiles/PGS019514.txt.gz
PGS019515
(TPMI_599.2_PRS-CS)
PGP000835
|
Chen HH
et al.
Nature (2025)
Retention of urine
Urinary retention
983,821
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019515/ScoringFiles/PGS019515.txt.gz
PGS019516
(TPMI_599.2_SBayesR)
PGP000835
|
Chen HH
et al.
Nature (2025)
Retention of urine
Urinary retention
992,540
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019516/ScoringFiles/PGS019516.txt.gz
PGS019517
(TPMI_599.5_Lassosum2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Frequency of urination and polyuria
Polyuria
206,142
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019517/ScoringFiles/PGS019517.txt.gz
PGS019518
(TPMI_599.5_LDpred2)
PGP000835
|
Chen HH
et al.
Nature (2025)
Frequency of urination and polyuria
Polyuria
939,875
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS019518/ScoringFiles/PGS019518.txt.gz
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