Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS001758
(GBE_INI25541)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MD in tract uncinate fasciculus (R) neuroimaging measurement,
brain volume		 1,033
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001758/ScoringFiles/PGS001758.txt.gz
PGS001759
(GBE_INI25553)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract forceps minor neuroimaging measurement,
brain volume		 1,836
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001759/ScoringFiles/PGS001759.txt.gz
PGS001760
(GBE_INI25560)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract medial lemniscus (R) neuroimaging measurement,
brain volume		 258
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001760/ScoringFiles/PGS001760.txt.gz
PGS001761
(GBE_INI25558)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract middle cerebellar peduncle neuroimaging measurement,
brain volume		 47
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001761/ScoringFiles/PGS001761.txt.gz
PGS001762
(GBE_INI25561)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract posterior thalamic radiation (L) neuroimaging measurement,
brain volume		 721
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001762/ScoringFiles/PGS001762.txt.gz
PGS001763
(GBE_INI25562)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract posterior thalamic radiation (R) neuroimaging measurement,
brain volume		 342
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001763/ScoringFiles/PGS001763.txt.gz
PGS001764
(GBE_INI25563)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract superior longitudinal fasciculus (L) neuroimaging measurement,
brain volume		 961
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001764/ScoringFiles/PGS001764.txt.gz
PGS001765
(GBE_INI25566)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA MO in tract superior thalamic radiation (R) neuroimaging measurement,
brain volume		 1,023
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001765/ScoringFiles/PGS001765.txt.gz
PGS001766
(GBE_INI25685)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract corticospinal tract (L) neuroimaging measurement,
brain volume		 1
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001766/ScoringFiles/PGS001766.txt.gz
PGS001767
(GBE_INI25692)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract inferior longitudinal fasciculus (R) neuroimaging measurement,
brain volume		 378
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001767/ScoringFiles/PGS001767.txt.gz
PGS001768
(GBE_INI25694)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract medial lemniscus (L) neuroimaging measurement,
brain volume		 297
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001768/ScoringFiles/PGS001768.txt.gz
PGS001769
(GBE_INI25698)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract superior longitudinal fasciculus (L) neuroimaging measurement,
brain volume		 1,298
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001769/ScoringFiles/PGS001769.txt.gz
PGS001770
(GBE_INI25699)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract superior longitudinal fasciculus (R) neuroimaging measurement,
brain volume		 726
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001770/ScoringFiles/PGS001770.txt.gz
PGS001771
(GBE_INI25701)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 WA OD in tract superior thalamic radiation (R) neuroimaging measurement,
brain volume		 1,352
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001771/ScoringFiles/PGS001771.txt.gz
PGS001069
(GBE_INI1528)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Water intake diet measurement 4,994
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001069/ScoringFiles/PGS001069.txt.gz
PGS002011
(portability-PLR_water_intake)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Water intake drinking behavior 43,709
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002011/ScoringFiles/PGS002011.txt.gz
PGS002230
(portability-ldpred2_water_intake)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Water intake drinking behavior 930,461
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002230/ScoringFiles/PGS002230.txt.gz
PGS001924
(portability-PLR_glasses)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Wears glasses or contact lenses eye measurement 311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001924/ScoringFiles/PGS001924.txt.gz
PGS002140
(portability-ldpred2_glasses)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Wears glasses or contact lenses eye measurement 762,684
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002140/ScoringFiles/PGS002140.txt.gz
PGS003898
(INI21002)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 Weight body weight 38,592
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003898/ScoringFiles/PGS003898.txt.gz
PGS004373
(X23098.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Weight body weight 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004373/ScoringFiles/PGS004373.txt.gz
PGS004410
(X21002.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Weight body weight 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004410/ScoringFiles/PGS004410.txt.gz
PGS001006
(GBE_BIN_FC1002306)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Weight change compared with 1 year ago body weight,
self-reported trait		 2,638
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001006/ScoringFiles/PGS001006.txt.gz
PGS000113
(wbc)
 PGP000051 |
Xu Y et al. Cell Genom (2022)
 White blood cell count leukocyte quantity 28,383
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000113/ScoringFiles/PGS000113.txt.gz
PGS000191
(wbc)
 PGP000078 |
Vuckovic D et al. Cell (2020)
 White blood cell count leukocyte quantity 636
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000191/ScoringFiles/PGS000191.txt.gz
PGS001239
(GBE_INI30000)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 White blood cell count leukocyte quantity 13,785
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001239/ScoringFiles/PGS001239.txt.gz
PGS002357
(blood_WHITE_COUNT.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002357/ScoringFiles/PGS002357.txt.gz
PGS002380
(blood_WHITE_COUNT.BOLT-LMM-BBJ)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 920,936
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002380/ScoringFiles/PGS002380.txt.gz
PGS002429
(blood_WHITE_COUNT.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 13,898
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002429/ScoringFiles/PGS002429.txt.gz
PGS002478
(blood_WHITE_COUNT.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 35,005
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002478/ScoringFiles/PGS002478.txt.gz
PGS002527
(blood_WHITE_COUNT.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 141,866
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002527/ScoringFiles/PGS002527.txt.gz
PGS002576
(blood_WHITE_COUNT.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 4,921
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002576/ScoringFiles/PGS002576.txt.gz
PGS002625
(blood_WHITE_COUNT.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 3,184
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002625/ScoringFiles/PGS002625.txt.gz
PGS002674
(blood_WHITE_COUNT.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 491,764
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002674/ScoringFiles/PGS002674.txt.gz
PGS002723
(blood_WHITE_COUNT.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 White blood cell count leukocyte quantity 983,751
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002723/ScoringFiles/PGS002723.txt.gz
PGS003483
(LDPred2_WBC)
 PGP000456 |
Zhang Y et al. EBioMedicine (2022)
 White blood cell count leukocyte quantity 860,306
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003483/ScoringFiles/PGS003483.txt.gz
PGS004855
(WBC_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 White blood cell count leukocyte quantity 1,165,158
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004855/ScoringFiles/PGS004855.txt.gz
PGS004856
(WBC_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 White blood cell count leukocyte quantity 6,594,323
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004856/ScoringFiles/PGS004856.txt.gz
PGS004857
(WBC_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 White blood cell count leukocyte quantity 4,141,649
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004857/ScoringFiles/PGS004857.txt.gz
PGS004858
(WBC_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 White blood cell count leukocyte quantity 6,594,323
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004858/ScoringFiles/PGS004858.txt.gz
PGS005197
(VPGS_WBC)
 PGP000723 |
Xiang R et al. Nat Commun (2025)
 White blood cell count variance leukocyte quantity 9,503,677
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005197/ScoringFiles/PGS005197.txt.gz
PGS001962
(portability-PLR_log_leukocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 White blood cell (leukocyte) count leukocyte quantity 80,228
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001962/ScoringFiles/PGS001962.txt.gz
PGS002180
(portability-ldpred2_log_leukocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 White blood cell (leukocyte) count leukocyte quantity 846,337
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002180/ScoringFiles/PGS002180.txt.gz
PGS003541
(cont-decay-log_leukocyte)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 White blood cell (leukocyte) count leukocyte quantity 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003541/ScoringFiles/PGS003541.txt.gz
PGS003924
(INI30000)
 PGP000502 |
Tanigawa Y et al. AJHG (2023)
 White blood cell (leukocyte) count leukocyte quantity 17,890
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003924/ScoringFiles/PGS003924.txt.gz
PGS004345
(X30000.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 White blood cell (leukocyte) count leukocyte quantity 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004345/ScoringFiles/PGS004345.txt.gz
PGS001169
(GBE_INI23101)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Whole body fat free mass lean body mass 34,486
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001169/ScoringFiles/PGS001169.txt.gz
PGS001950
(portability-PLR_log_fat_free_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat-free mass lean body mass 128,827
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001950/ScoringFiles/PGS001950.txt.gz
PGS002168
(portability-ldpred2_log_fat_free_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat-free mass lean body mass 966,825
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002168/ScoringFiles/PGS002168.txt.gz
PGS003531
(cont-decay-log_fat_free_mass)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Whole body fat-free mass lean body mass 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003531/ScoringFiles/PGS003531.txt.gz
Showing 5051 to 5100 of 5134 rows