Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS003180
(ExPRSweb_VitD_100021-raw_PT_MGI_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Vitamin D vitamin D measurement 5
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003180/ScoringFiles/PGS003180.txt.gz
PGS003354
(SSNS-GRS)
PGP000407 |
Downie ML et al. Pediatr Nephrol (2022)
Childhood steroid-sensitive nephrotic syndrome nephrotic syndrome 5
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003354/ScoringFiles/PGS003354.txt.gz
PGS003454
(PRS5_DLBCL)
PGP000448 |
Berndt SI et al. Leukemia (2022)
Diffuse large B-cell lymphoma diffuse large B-cell lymphoma 5
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003454/ScoringFiles/PGS003454.txt.gz
PGS000156
(cGRS_Lung)
PGP000075 |
Shi Z et al. Cancer Med (2019)
Lung cancer lung carcinoma 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000156/ScoringFiles/PGS000156.txt.gz
PGS000162
(cGRS_Thyroid)
PGP000075 |
Shi Z et al. Cancer Med (2019)
Thyroid cancer thyroid carcinoma 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000162/ScoringFiles/PGS000162.txt.gz
PGS000399
(PRSWEB_PHECODE172_20001-1003_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Skin cancer skin carcinoma 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000399/ScoringFiles/PGS000399.txt.gz
PGS000467
(PRSWEB_PHECODE172.22_cSCC-Chahal_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Squamous cell carcinoma squamous cell carcinoma 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000467/ScoringFiles/PGS000467.txt.gz
PGS000547
(PRSWEB_PHECODE184.11_Phelan-EPOC_P_5e-08_UKB_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of ovary ovarian neoplasm 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000547/ScoringFiles/PGS000547.txt.gz
PGS000598
(PRSWEB_PHECODE187.2_C3-TESTIS_P_5e-08_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Malignant neoplasm of testis testicular carcinoma 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000598/ScoringFiles/PGS000598.txt.gz
PGS000645
(PRSWEB_PHECODE204.1_C-LYMPHOID-LEUKAEMIA_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Lymphoid leukemia lymphoid leukemia 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000645/ScoringFiles/PGS000645.txt.gz
PGS000650
(PRSWEB_PHECODE204.12_UKBB-SAIGE-HRC-X204.12_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Chronic lymphocytic leukemia chronic lymphocytic leukemia 6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000650/ScoringFiles/PGS000650.txt.gz
PGS000848
(T2D_Adiposity)
PGP000211 |
Aly DM et al. Nat Genet (2021)
Type 2 diabetes (based on SNPs associated with adiposity) type 2 diabetes mellitus 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000848/ScoringFiles/PGS000848.txt.gz
PGS000858
(T2D_Proinsulin)
PGP000211 |
Aly DM et al. Nat Genet (2021)
Type 2 diabetes (based on SNPs associated with proinsulin levels) type 2 diabetes mellitus 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000858/ScoringFiles/PGS000858.txt.gz
PGS000914
(PRS6_EC)
PGP000241 |
Wang M et al. Sci Rep (2021)
Abnormal electrocardiogram Abnormal EKG 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000914/ScoringFiles/PGS000914.txt.gz
PGS000929
(GBE_HC1583)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
All-cause dementia (algorithmically-defined) dementia 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000929/ScoringFiles/PGS000929.txt.gz
PGS001110
(GBE_HC1209)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reactive arthropathies (time-to-event) reactive arthritis 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001110/ScoringFiles/PGS001110.txt.gz
PGS001275
(GBE_HC880)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Other retinal disorders (time-to-event) retinopathy 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001275/ScoringFiles/PGS001275.txt.gz
PGS001349
(GBE_HC807)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Alzheimer's disease (time-to-event) Alzheimer disease 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001349/ScoringFiles/PGS001349.txt.gz
PGS001353
(PRS6_PD)
PGP000250 |
Sia MW et al. Mov Disord (2021)
Parkinson's disease Parkinson disease 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001353/ScoringFiles/PGS001353.txt.gz
PGS002272
(GRS6_COVID)
PGP000302 |
Horowitz JE et al. Nat Genet (2022)
COVID-19 infection COVID-19 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002272/ScoringFiles/PGS002272.txt.gz
PGS002304
(PRS6_FL)
PGP000328 |
Choi J et al. Int J Cancer (2020)
Follicular lymphoma follicular lymphoma 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002304/ScoringFiles/PGS002304.txt.gz
PGS003310
(ExPRSweb_CysC_eGFRcys-overall-EA_PT_UKB_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate
6
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003310/ScoringFiles/PGS003310.txt.gz
PGS003686
(L_molecular_layer_HP_body_UKBB_EUR_GWAS)
PGP000464 |
Liu N et al. Nat Genet (2023)
Left molecular layer hippocampus proper body volume hippocampus molecular layer volume 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003686/ScoringFiles/PGS003686.txt.gz
PGS003858
(GRS6_BMIadj)
PGP000496 |
Sofer T et al. EBioMedicine (2023)
Obstructive sleep apnea (BMI adjusted) obstructive sleep apnea 6
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003858/ScoringFiles/PGS003858.txt.gz
PGS000023
(AA_GRS)
PGP000013 |
Onengut-Gumuscu S et al. Diabetes Care (2019)
Type 1 diabetes (T1D) type 1 diabetes mellitus 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000023/ScoringFiles/PGS000023.txt.gz
PGS000315
(GRS7_lgE)
PGP000092 |
Xie T et al. Circ Genom Precis Med (2020)
Immunoglobulin E (IgE) serum IgE measurement 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000315/ScoringFiles/PGS000315.txt.gz
PGS000410
(PRSWEB_PHECODE172.1_20001-1059_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Melanomas of skin (diagnosis or history) melanoma 7
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000410/ScoringFiles/PGS000410.txt.gz
PGS000463
(PRSWEB_PHECODE172.22_GWAS-Catalog-r2019-05-03-X172.22_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Squamous cell carcinoma squamous cell carcinoma 7
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000463/ScoringFiles/PGS000463.txt.gz
PGS000471
(PRSWEB_PHECODE172.3_UKBB-SAIGE-HRC-X172.3_LASSOSUM_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Carcinoma in situ of skin skin carcinoma in situ 7
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000471/ScoringFiles/PGS000471.txt.gz
PGS000664
(GRS7_GFR)
PGP000124 |
Gorski M et al. Kidney Int (2020)
Rapid decline of glomerular filtration rate (GFR) GFR change measurement 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000664/ScoringFiles/PGS000664.txt.gz
PGS000779
(PGS7_AD)
PGP000183 |
Zhou X et al. Alzheimers Dement (Amst) (2020)
Alzheimer's disease Alzheimer disease 7
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000779/ScoringFiles/PGS000779.txt.gz
PGS001179
(GBE_HC711)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Vascular dementia (time-to-event) vascular dementia 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001179/ScoringFiles/PGS001179.txt.gz
PGS001308
(GBE_HC321)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Sjogren's syndrome/sicca syndrome Sjogren syndrome 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001308/ScoringFiles/PGS001308.txt.gz
PGS003311
(ExPRSweb_CysC_eGFRcys-overall-EA_PLINK_UKB_20211120)
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Estimated glomerular filtration rate (Cystatin C) cystatin C measurement,
glomerular filtration rate
7
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003311/ScoringFiles/PGS003311.txt.gz
PGS003418
(PRState_Eur)
PGP000430 |
Pagadala MS et al. BMC Cancer (2022)
Prostate cancer prostate cancer 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003418/ScoringFiles/PGS003418.txt.gz
PGS003455
(PRS7_FL)
PGP000448 |
Berndt SI et al. Leukemia (2022)
Follicular lymphoma follicular lymphoma 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003455/ScoringFiles/PGS003455.txt.gz
PGS004899
(PRS_SCAD)
PGP000629 |
Saw J et al. Nat Commun (2020)
Spontaneous coronary artery dissection spontaneous coronary artery dissection 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004899/ScoringFiles/PGS004899.txt.gz
PGS004909
(EUR_wGRS7)
PGP000641 |
El-Boraie A et al. Addict Biol (2019)
Nicotine metabolite ratio nicotine metabolite ratio 7
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004909/ScoringFiles/PGS004909.txt.gz
PGS000450
(PRSWEB_PHECODE172.21_20001-1073_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Basal cell carcinoma basal cell carcinoma 8
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000450/ScoringFiles/PGS000450.txt.gz
PGS000543
(PRSWEB_PHECODE184_C3-FEMALE-GENITAL_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Cancer of other female genital organs female reproductive system neoplasm 8
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000543/ScoringFiles/PGS000543.txt.gz
PGS000626
(PRSWEB_PHECODE193_20001-1065_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Thyroid cancer thyroid carcinoma 8
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000626/ScoringFiles/PGS000626.txt.gz
PGS000629
(PRSWEB_PHECODE193_C73_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Thyroid cancer thyroid carcinoma 8
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000629/ScoringFiles/PGS000629.txt.gz
PGS000632
(PRSWEB_PHECODE193_GWAS-Catalog-r2019-05-03-X193_PT_MGI_20200608)
PGP000118 |
Fritsche LG et al. Am J Hum Genet (2020)
Thyroid cancer thyroid carcinoma 8
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000632/ScoringFiles/PGS000632.txt.gz
PGS000852
(T2D_Insulin_Secretion_1)
PGP000211 |
Aly DM et al. Nat Genet (2021)
Type 2 diabetes (based on SNPs associated with insulin secretion) type 2 diabetes mellitus 8
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000852/ScoringFiles/PGS000852.txt.gz
PGS002245
(PGS8_LF)
PGP000273 |
Haas ME et al. Cell Genom (2021)
Liver fat (MRI-derived) liver fat measurement 8
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002245/ScoringFiles/PGS002245.txt.gz
PGS002277
(pPS_Insulin_secretion_1)
PGP000305 |
Siddiqui MK et al. Diabetologia (2022)
Type 2 diabetes (based on SNPs associated with insulin secretion) type 2 diabetes mellitus 8
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002277/ScoringFiles/PGS002277.txt.gz
PGS003442
(GRS8_MD)
PGP000444 |
Petrican R et al. Sci Rep (2023)
Major depressive disorder major depressive disorder 8
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003442/ScoringFiles/PGS003442.txt.gz
PGS003613
(L_CA1_body_UKBB_EUR_GWAS)
PGP000464 |
Liu N et al. Nat Genet (2023)
Left CA1 body volume hippocampal CA1 volume 8
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003613/ScoringFiles/PGS003613.txt.gz
PGS004221
(PRS8_carbohydrate)
PGP000521 |
Merino J et al. Mol Psychiatry (2023)
Carbohydrate preference carbohydrate intake measurement 8
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004221/ScoringFiles/PGS004221.txt.gz
PGS004918
(PRS8_Synapse)
PGP000649 |
Lawingco T et al. Neurobiol Aging (2020)
Late-onset Alzheimers disease (based on SNPs in genes involved in synaptic function) late-onset Alzheimer's disease 8
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004918/ScoringFiles/PGS004918.txt.gz