Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002204
(portability-ldpred2_M_less_hair)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hair/balding pattern balding measurement 593,179
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002204/ScoringFiles/PGS002204.txt.gz
PGS002203
(portability-ldpred2_lymphocyte_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte percentage lymphocyte percentage of leukocytes 775,312
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002203/ScoringFiles/PGS002203.txt.gz
PGS002202
(portability-ldpred2_log_water_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body water mass whole body water mass 966,737
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002202/ScoringFiles/PGS002202.txt.gz
PGS002201
(portability-ldpred2_log_waist_circ)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Waist circumference waist circumference 984,035
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002201/ScoringFiles/PGS002201.txt.gz
PGS002200
(portability-ldpred2_log_vitaminD)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Vitamin D vitamin D level 567,735
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002200/ScoringFiles/PGS002200.txt.gz
PGS002199
(portability-ldpred2_log_ventricular_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ventricular rate ventricular rate measurement 705,680
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002199/ScoringFiles/PGS002199.txt.gz
PGS002198
(portability-ldpred2_log_urea)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Urea urea measurement 820,118
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002198/ScoringFiles/PGS002198.txt.gz
PGS002197
(portability-ldpred2_log_triglycerides)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Triglycerides triglyceride measurement 731,035
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002197/ScoringFiles/PGS002197.txt.gz
PGS002196
(portability-ldpred2_log_sleep)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sleep duration sleep duration trait 927,619
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002196/ScoringFiles/PGS002196.txt.gz
PGS002195
(portability-ldpred2_log_SHBG)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Sex hormone binding globulin (SHBG) sex hormone-binding globulin measurement 650,364
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002195/ScoringFiles/PGS002195.txt.gz
PGS002194
(portability-ldpred2_log_reticulocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reticulocyte count reticulocyte count 773,305
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002194/ScoringFiles/PGS002194.txt.gz
PGS002193
(portability-ldpred2_log_pulse_rate)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Pulse rate, automated reading heart rate 858,487
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002193/ScoringFiles/PGS002193.txt.gz
PGS002192
(portability-ldpred2_log_potassium_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Potassium in urine urine potassium amount 881,567
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002192/ScoringFiles/PGS002192.txt.gz
PGS002191
(portability-ldpred2_log_platelet)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet count platelet count 663,591
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002191/ScoringFiles/PGS002191.txt.gz
PGS002190
(portability-ldpred2_log_platelet_width)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet distribution width platelet component distribution width 482,649
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002190/ScoringFiles/PGS002190.txt.gz
PGS002189
(portability-ldpred2_log_platelet_volume)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean platelet (thrombocyte) volume platelet volume 462,934
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002189/ScoringFiles/PGS002189.txt.gz
PGS002188
(portability-ldpred2_log_platelet_crit)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Platelet crit platelet crit 703,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002188/ScoringFiles/PGS002188.txt.gz
PGS002187
(portability-ldpred2_log_neutrophil)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Neutrophil count neutrophil count 803,767
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002187/ScoringFiles/PGS002187.txt.gz
PGS002186
(portability-ldpred2_log_monocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Monocyte count monocyte count 641,455
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002186/ScoringFiles/PGS002186.txt.gz
PGS002185
(portability-ldpred2_log_microalbumin_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Microalbumin in urine urinary microalbumin measurement 671,610
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002185/ScoringFiles/PGS002185.txt.gz
PGS002184
(portability-ldpred2_log_mean_carotid_IMT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Mean carotid IMT (intima-medial thickness) at 120/150/210/240 degrees carotid artery thickness 734,561
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002184/ScoringFiles/PGS002184.txt.gz
PGS002183
(portability-ldpred2_log_lymphocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lymphocyte count lymphocyte count 814,921
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002183/ScoringFiles/PGS002183.txt.gz
PGS002182
(portability-ldpred2_log_log_gammaGT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Gamma-glutamyl transferase serum gamma-glutamyl transferase measurement 713,481
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002182/ScoringFiles/PGS002182.txt.gz
PGS002181
(portability-ldpred2_log_lipoA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Lipoprotein A lipoprotein A measurement 31,355
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002181/ScoringFiles/PGS002181.txt.gz
PGS002180
(portability-ldpred2_log_leukocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 White blood cell (leukocyte) count leukocyte quantity 846,337
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002180/ScoringFiles/PGS002180.txt.gz
PGS002179
(portability-ldpred2_log_impedance)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Impedance of whole body body composition measurement 978,109
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002179/ScoringFiles/PGS002179.txt.gz
PGS002178
(portability-ldpred2_log_IGF1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 IGF-1 IGF-1 measurement 817,740
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002178/ScoringFiles/PGS002178.txt.gz
PGS002177
(portability-ldpred2_log_HLR_reticulocyte)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 High light scatter reticulocyte count reticulocyte amount 780,048
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002177/ScoringFiles/PGS002177.txt.gz
PGS002176
(portability-ldpred2_log_hip_circ)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Hip circumference hip circumference 977,411
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002176/ScoringFiles/PGS002176.txt.gz
PGS002175
(portability-ldpred2_log_heel_SoS)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Speed of sound through heel velocity of sound measurement 724,667
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002175/ScoringFiles/PGS002175.txt.gz
PGS002174
(portability-ldpred2_log_heel_BUA)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Heel Broadband ultrasound attenuation, direct entry heel bone mineral density 732,595
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002174/ScoringFiles/PGS002174.txt.gz
PGS002173
(portability-ldpred2_log_heel_BMD)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Heel bone mineral density (BMD) heel bone mineral density 729,074
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002173/ScoringFiles/PGS002173.txt.gz
PGS002172
(portability-ldpred2_log_HDL)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 HDL cholesterol high density lipoprotein cholesterol measurement 732,902
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002172/ScoringFiles/PGS002172.txt.gz
PGS002171
(portability-ldpred2_log_HbA1c)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glycated haemoglobin (HbA1c) HbA1c measurement 736,730
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002171/ScoringFiles/PGS002171.txt.gz
PGS002170
(portability-ldpred2_log_glucose)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Glucose glucose measurement 602,241
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002170/ScoringFiles/PGS002170.txt.gz
PGS002169
(portability-ldpred2_log_fat_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat mass fat pad mass 988,292
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002169/ScoringFiles/PGS002169.txt.gz
PGS002168
(portability-ldpred2_log_fat_free_mass)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Whole body fat-free mass lean body mass 966,825
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002168/ScoringFiles/PGS002168.txt.gz
PGS002167
(portability-ldpred2_log_eosinophil_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Eosinophil percentage eosinophil percentage of leukocytes 593,459
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002167/ScoringFiles/PGS002167.txt.gz
PGS002166
(portability-ldpred2_log_ECG_QRS_duration)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 QRS duration QRS duration 471,172
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002166/ScoringFiles/PGS002166.txt.gz
PGS002165
(portability-ldpred2_log_cystatinC)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cystatin C cystatin C measurement 781,302
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002165/ScoringFiles/PGS002165.txt.gz
PGS002164
(portability-ldpred2_log_CRP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 C-reactive protein C-reactive protein measurement 736,345
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002164/ScoringFiles/PGS002164.txt.gz
PGS002163
(portability-ldpred2_log_creatinine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Creatinine serum creatinine amount 835,964
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002163/ScoringFiles/PGS002163.txt.gz
PGS002162
(portability-ldpred2_log_creatinine_urine)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Creatinine (enzymatic) in urine creatinine clearance measurement 922,786
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002162/ScoringFiles/PGS002162.txt.gz
PGS002161
(portability-ldpred2_log_BMI)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Body mass index (BMI) body mass index 990,022
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002161/ScoringFiles/PGS002161.txt.gz
PGS002160
(portability-ldpred2_log_bilirubin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Total bilirubin bilirubin measurement 120,068
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002160/ScoringFiles/PGS002160.txt.gz
PGS002159
(portability-ldpred2_log_AST)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Aspartate aminotransferase level aspartate aminotransferase measurement 716,914
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002159/ScoringFiles/PGS002159.txt.gz
PGS002158
(portability-ldpred2_log_ALT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alanine aminotransferase serum alanine aminotransferase amount 774,274
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002158/ScoringFiles/PGS002158.txt.gz
PGS002157
(portability-ldpred2_log_ALP)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alkaline phosphatase alkaline phosphatase measurement 874,365
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002157/ScoringFiles/PGS002157.txt.gz
PGS002156
(portability-ldpred2_log_age_first_sex)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age first had sexual intercourse age at first sexual intercourse measurement 972,919
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002156/ScoringFiles/PGS002156.txt.gz
PGS002155
(portability-ldpred2_less_tanned)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Ease of skin tanning suntan 240,701
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002155/ScoringFiles/PGS002155.txt.gz
Showing 4851 to 4900 of 6982 rows