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PGS Catalog
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Polygenic Scores (PGS)
Polygenic Scores (PGS)
Filter PGS by Participant Ancestry
Individuals included in:
Any Stage [G, D, E]
All Stages combined [G + D + E]
Development [G, D]
- GWAS [G]
- Score development [D]
PGS Evaluation [E]
G
- Source of Variant Associations (
G
WAS)
D
- Score
D
evelopment/Training
E
- PGS
E
valuation
List of ancestries includes:
--
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Display options:
Show European ancestry data
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Multi-ancestry data
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name
PGS Publication ID
(PGP)
Reported Trait
Mapped Trait(s)
(Ontology)
Number of Variants
Ancestry distribution
GWAS
Dev
Eval
Scoring File
(FTP Link)
PGS002435
(body_BALDING1.P+T.0.001)
PGP000332
|
Weissbrod O
et al.
Nat Genet (2022)
Balding Type 1
balding measurement
21,564
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002435/ScoringFiles/PGS002435.txt.gz
PGS002484
(body_BALDING1.P+T.0.01)
PGP000332
|
Weissbrod O
et al.
Nat Genet (2022)
Balding Type 1
balding measurement
106,858
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002484/ScoringFiles/PGS002484.txt.gz
PGS002533
(body_BALDING1.P+T.1e-06)
PGP000332
|
Weissbrod O
et al.
Nat Genet (2022)
Balding Type 1
balding measurement
2,899
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002533/ScoringFiles/PGS002533.txt.gz
PGS002582
(body_BALDING1.P+T.5e-08)
PGP000332
|
Weissbrod O
et al.
Nat Genet (2022)
Balding Type 1
balding measurement
1,998
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002582/ScoringFiles/PGS002582.txt.gz
PGS002631
(body_BALDING1.PolyFun-pred)
PGP000332
|
Weissbrod O
et al.
Nat Genet (2022)
Balding Type 1
balding measurement
877,406
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002631/ScoringFiles/PGS002631.txt.gz
PGS002680
(body_BALDING1.SBayesR)
PGP000332
|
Weissbrod O
et al.
Nat Genet (2022)
Balding Type 1
balding measurement
965,079
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002680/ScoringFiles/PGS002680.txt.gz
PGS000119
(BCC32)
PGP000055
|
Fritsche LG
et al.
PLoS Genet (2019)
Basal cell carcinoma
basal cell carcinoma
32
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000119/ScoringFiles/PGS000119.txt.gz
PGS000445
(PRSWEB_PHECODE172.21_20001-1061_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000445/ScoringFiles/PGS000445.txt.gz
PGS000446
(PRSWEB_PHECODE172.21_20001-1061_PRS-CS_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
1,111,490
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000446/ScoringFiles/PGS000446.txt.gz
PGS000447
(PRSWEB_PHECODE172.21_20001-1061_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
72
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000447/ScoringFiles/PGS000447.txt.gz
PGS000448
(PRSWEB_PHECODE172.21_20001-1061_LASSOSUM_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
183
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000448/ScoringFiles/PGS000448.txt.gz
PGS000449
(PRSWEB_PHECODE172.21_20001-1073_PRS-CS_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
1,073,162
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000449/ScoringFiles/PGS000449.txt.gz
PGS000450
(PRSWEB_PHECODE172.21_20001-1073_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
8
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000450/ScoringFiles/PGS000450.txt.gz
PGS000451
(PRSWEB_PHECODE172.21_20001-1073_LASSOSUM_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
2,231
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000451/ScoringFiles/PGS000451.txt.gz
PGS000452
(PRSWEB_PHECODE172.21_BCC-Chahal_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
28
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000452/ScoringFiles/PGS000452.txt.gz
PGS000453
(PRSWEB_PHECODE172.21_BCC-Chahal_P_5e-08_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
28
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000453/ScoringFiles/PGS000453.txt.gz
PGS000454
(PRSWEB_PHECODE172.21_BCC-Chahal_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
27
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000454/ScoringFiles/PGS000454.txt.gz
PGS000455
(PRSWEB_PHECODE172.21_BCC-Chahal_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
28
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000455/ScoringFiles/PGS000455.txt.gz
PGS000456
(PRSWEB_PHECODE172.21_GWAS-Catalog-r2019-05-03-X172.21_P_5e-08_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
30
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000456/ScoringFiles/PGS000456.txt.gz
PGS000457
(PRSWEB_PHECODE172.21_GWAS-Catalog-r2019-05-03-X172.21_P_5e-08_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
30
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000457/ScoringFiles/PGS000457.txt.gz
PGS000458
(PRSWEB_PHECODE172.21_GWAS-Catalog-r2019-05-03-X172.21_PT_MGI_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
23
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000458/ScoringFiles/PGS000458.txt.gz
PGS000459
(PRSWEB_PHECODE172.21_GWAS-Catalog-r2019-05-03-X172.21_PT_UKB_20200608)
PGP000118
|
Fritsche LG
et al.
Am J Hum Genet (2020)
Basal cell carcinoma
basal cell carcinoma
24
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000459/ScoringFiles/PGS000459.txt.gz
PGS000730
(PRS_BCC)
PGP000138
|
Fontanillas P
et al.
Nat Commun (2021)
Basal cell carcinoma
basal cell carcinoma
47
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000730/ScoringFiles/PGS000730.txt.gz
- Check
Terms/Licenses
PGS003417
(UKBPRS)
PGP000429
|
Seviiri M
et al.
Nat Commun (2022)
Basal cell carcinoma
basal cell carcinoma
273
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003417/ScoringFiles/PGS003417.txt.gz
PGS003416
(MTAGPRS)
PGP000429
|
Seviiri M
et al.
Nat Commun (2022)
Basal cell carcinoma (MTAG)
basal cell carcinoma
462
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003416/ScoringFiles/PGS003416.txt.gz
PGS001108
(GBE_INI23105)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Basal metabolic rate
base metabolic rate measurement
32,154
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001108/ScoringFiles/PGS001108.txt.gz
PGS003903
(INI23105)
PGP000502
|
Tanigawa Y
et al.
AJHG (2023)
Basal metabolic rate
base metabolic rate measurement
46,752
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003903/ScoringFiles/PGS003903.txt.gz
PGS004379
(X23105.score)
PGP000561
|
Jung H
et al.
Commun Biol (2024)
Basal metabolic rate
metabolic rate measurement
1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004379/ScoringFiles/PGS004379.txt.gz
PGS000088
(baso)
PGP000051
|
Xu Y
et al.
Cell Genom (2022)
Basophil count
basophil count
9,121
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000088/ScoringFiles/PGS000088.txt.gz
PGS000163
(baso)
PGP000078
|
Vuckovic D
et al.
Cell (2020)
Basophil count
basophil count
185
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000163/ScoringFiles/PGS000163.txt.gz
PGS001378
(GBE_INI30160)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Basophil count
basophil count
3,050
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001378/ScoringFiles/PGS001378.txt.gz
PGS003940
(INI30160)
PGP000502
|
Tanigawa Y
et al.
AJHG (2023)
Basophil count
basophil count
4,184
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003940/ScoringFiles/PGS003940.txt.gz
PGS004727
(Basophils_PRSmix_eur)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Basophil count
basophil count
6,503
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004727/ScoringFiles/PGS004727.txt.gz
PGS004728
(Basophils_PRSmix_sas)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Basophil count
basophil count
6,132,012
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004728/ScoringFiles/PGS004728.txt.gz
PGS004729
(Basophils_PRSmixPlus_eur)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Basophil count
basophil count
1,538,675
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004729/ScoringFiles/PGS004729.txt.gz
PGS004730
(Basophils_PRSmixPlus_sas)
PGP000604
|
Truong B
et al.
Cell Genom (2024)
Basophil count
basophil count
6,132,012
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004730/ScoringFiles/PGS004730.txt.gz
PGS001377
(GBE_INI30220)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Basophil percentage
basophil percentage of leukocytes
3,205
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001377/ScoringFiles/PGS001377.txt.gz
PGS003945
(INI30220)
PGP000502
|
Tanigawa Y
et al.
AJHG (2023)
Basophil percentage
basophil percentage of leukocytes
3,472
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003945/ScoringFiles/PGS003945.txt.gz
PGS000089
(baso_p)
PGP000051
|
Xu Y
et al.
Cell Genom (2022)
Basophil percentage of white cells
basophil percentage of leukocytes
5,248
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000089/ScoringFiles/PGS000089.txt.gz
PGS000164
(baso_p)
PGP000078
|
Vuckovic D
et al.
Cell (2020)
Basophil percentage of white cells
basophil percentage of leukocytes
150
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000164/ScoringFiles/PGS000164.txt.gz
PGS001056
(GBE_QT_FC1001369)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Beef intake
diet measurement
991
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001056/ScoringFiles/PGS001056.txt.gz
PGS001811
(portability-PLR_208)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Benign neoplasm of colon
benign colon neoplasm
2,231
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001811/ScoringFiles/PGS001811.txt.gz
PGS002019
(portability-ldpred2_208)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Benign neoplasm of colon
benign colon neoplasm
667,546
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002019/ScoringFiles/PGS002019.txt.gz
PGS001812
(portability-PLR_211)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Benign neoplasm of other parts of digestive system
benign digestive system neoplasm
801
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001812/ScoringFiles/PGS001812.txt.gz
PGS002020
(portability-ldpred2_211)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Benign neoplasm of other parts of digestive system
benign digestive system neoplasm
503,832
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002020/ScoringFiles/PGS002020.txt.gz
PGS001813
(portability-PLR_218)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Benign neoplasm of uterus
uterine benign neoplasm
1,308
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001813/ScoringFiles/PGS001813.txt.gz
PGS002021
(portability-ldpred2_218)
PGP000263
|
Privé F
et al.
Am J Hum Genet (2022)
Benign neoplasm of uterus
uterine benign neoplasm
547,617
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002021/ScoringFiles/PGS002021.txt.gz
PGS000718
(PRPBB_44)
PGP000134
|
Lanfear DE
et al.
Circ Heart Fail (2020)
Beta-blocker survival benefit
response to beta blocker
44
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000718/ScoringFiles/PGS000718.txt.gz
PGS002786
(BD_SDPR)
PGP000370
|
Gui Y
et al.
Transl Psychiatry (2022)
Bipolar disorder
bipolar disorder
948,996
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002786/ScoringFiles/PGS002786.txt.gz
PGS001226
(GBE_INI20022)
PGP000244
|
Tanigawa Y
et al.
PLoS Genet (2022)
Birth weight
birth weight
6,278
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001226/ScoringFiles/PGS001226.txt.gz
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