PGS Publication: PGP000571

Publication Information (EuropePMC)
Title Polygenic risk score as a determinant of risk of keratinocyte cancer in an Australian population-based cohort.
PubMed ID 35881107(Europe PMC)
doi 10.1111/jdv.18466
Publication Date Aug. 4, 2022
Journal J Eur Acad Dermatol Venereol
Author(s) Liyanage UE, Law MH, Antonsson A, Hughes MCB, Gordon S, van der Pols JC, Green AC.
Released in PGS Catalog: Jan. 26, 2024

Associated Polygenic Score(s)

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Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
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Not Reported

PGS Developed By This Publication

Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS004592
(PRS_KC)
PGP000571 |
Liyanage UE et al. J Eur Acad Dermatol Venereol (2022)
Keratinocyte cancer keratinocyte carcinoma 78
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004592/ScoringFiles/PGS004592.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM020722 PGS004592
(PRS_KC)
PSS011383|
European Ancestry|
998 individuals
PGP000571 |
Liyanage UE et al. J Eur Acad Dermatol Venereol (2022)
Reported Trait: Keratinocyte cancer OR: 1.51 [1.3, 1.76] AUROC: 0.74 : 0.231 Age, sex, self-reported skin tanning ability, clinical grade of neck elastosis, genotyping batch, first 2 PCs
PPM020723 PGS004592
(PRS_KC)
PSS011383|
European Ancestry|
998 individuals
PGP000571 |
Liyanage UE et al. J Eur Acad Dermatol Venereol (2022)
Reported Trait: Keratinocyte cancer Odds ratio (OR, top PRS quintile vs bottom PRS quintile): 3.45 [2.18, 5.5] Age, sex, self-reported skin tanning ability, clinical grade of neck elastosis, genotyping batch, first 2 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011383
[
  • 432 cases
  • , 566 controls
]
,
44.0 % Male samples
European NSCS