Polygenic Score (PGS) ID: PGS001053

Predicted Trait
Reported Trait Time spend outdoors in winter
Mapped Trait(s) time spent outdoors measurement (EFO_0600081)
Additional Trait Information https://biobankengine.stanford.edu/RIVAS_HG19/snpnet/INI1060
Released in PGS Catalog: Oct. 21, 2021
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Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name GBE_INI1060
Development Method
Name snpnet
Parameters NR
Variants
Original Genome Build GRCh37
Number of Variants 2,323
Effect Weight Type NR
PGS Source
PGS Catalog Publication (PGP) ID PGP000244
Citation (link to publication) Tanigawa Y et al. PLoS Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
218,456 individuals (100%)
PGS Evaluation
European: 40%
African: 20%
East Asian: 20%
South Asian: 20%
5 Sample Sets

Development Samples

Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
— 218,456 individuals European UKB — — — white British ancestry —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008024 PSS004792|
East Asian Ancestry|
1,039 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Outdoor time, winter — — R²: 0.03301 [0.01636, 0.04966]
Incremental R2 (full-covars): -0.00819
PGS R2 (no covariates): 0.00254 [-0.00222, 0.0073]		 age, sex, UKB array type, Genotype PCs —
PPM008023 PSS004791|
African Ancestry|
4,650 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Outdoor time, winter — — R²: 0.02027 [0.01349, 0.02705]
Incremental R2 (full-covars): -0.00026
PGS R2 (no covariates): 0.00041 [-0.00057, 0.0014]		 age, sex, UKB array type, Genotype PCs —
PPM008025 PSS004793|
European Ancestry|
19,562 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Outdoor time, winter — — R²: 0.05221 [0.04683, 0.05759]
Incremental R2 (full-covars): 0.00205
PGS R2 (no covariates): 0.00265 [0.00137, 0.00392]		 age, sex, UKB array type, Genotype PCs —
PPM008026 PSS004794|
South Asian Ancestry|
5,444 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Outdoor time, winter — — R²: 0.02181 [0.01542, 0.02821]
Incremental R2 (full-covars): 0.00149
PGS R2 (no covariates): 0.00143 [-0.00024, 0.0031]		 age, sex, UKB array type, Genotype PCs —
PPM008027 PSS004795|
European Ancestry|
54,472 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Outdoor time, winter — — R²: 0.04573 [0.04264, 0.04881]
Incremental R2 (full-covars): 0.00414
PGS R2 (no covariates): 0.0041 [0.00314, 0.00507]		 age, sex, UKB array type, Genotype PCs —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS004791 — — 4,650 individuals — African unspecified — UKB —
PSS004792 — — 1,039 individuals — East Asian — UKB —
PSS004793 — — 19,562 individuals — European non-white British ancestry UKB —
PSS004794 — — 5,444 individuals — South Asian — UKB —
PSS004795 — — 54,472 individuals — European white British ancestry UKB Testing cohort (heldout set)