Polygenic Score (PGS) ID: PGS001873

Predicted Trait
Reported Trait Diseases of hair and hair follicles
Mapped Trait(s) disease of pilosebaceous unit (MONDO_0002917)
Additional Trait Information dermatologic
Released in PGS Catalog: Jan. 10, 2022
Download Score FTP directory
Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name portability-PLR_704
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 461
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM009873 PSS009124|
European Ancestry|
4,120 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): 0.0826 [0.0521, 0.113] sex, age, birth date, deprivation index, 16 PCs
PPM009874 PSS008678|
European Ancestry|
6,645 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): 0.0472 [0.0232, 0.0712] sex, age, birth date, deprivation index, 16 PCs
PPM009876 PSS008232|
South Asian Ancestry|
6,308 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): 0.0395 [0.0147, 0.0641] sex, age, birth date, deprivation index, 16 PCs
PPM009877 PSS008012|
East Asian Ancestry|
1,809 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): -0.0177 [-0.064, 0.0287] sex, age, birth date, deprivation index, 16 PCs
PPM009878 PSS007797|
African Ancestry|
2,478 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): -0.0289 [-0.0684, 0.0106] sex, age, birth date, deprivation index, 16 PCs
PPM009879 PSS008901|
African Ancestry|
3,918 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): -0.0047 [-0.0361, 0.0267] sex, age, birth date, deprivation index, 16 PCs
PPM009872 PSS009350|
European Ancestry|
19,926 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): 0.056 [0.0422, 0.0699] sex, age, birth date, deprivation index, 16 PCs
PPM009875 PSS008452|
Greater Middle Eastern Ancestry|
1,195 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Diseases of hair and hair follicles Partial Correlation (partial-r): 0.0567 sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009124 4,120 individuals European Poland (NE Europe) UKB
PSS008901 3,918 individuals African unspecified Nigeria (West Africa) UKB
PSS008678 6,645 individuals European Italy (South Europe) UKB
PSS009350 19,926 individuals European UK (+ Ireland) UKB
PSS008232 6,308 individuals South Asian India (South Asia) UKB
PSS008452 1,195 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS008012 1,809 individuals East Asian China (East Asia) UKB
PSS007797 2,478 individuals African American or Afro-Caribbean Carribean UKB