Polygenic Score (PGS) ID: PGS001904

Predicted Trait
Reported Trait PQ interval
Mapped Trait(s) PR interval (EFO_0004462)
Additional Trait Information physical measures
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-PLR_ECG_PQ_interval
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 826
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010115 PSS009364|
European Ancestry|
992 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.173 [0.1113, 0.2333] sex, age, birth date, deprivation index, 16 PCs
PPM010116 PSS009138|
European Ancestry|
181 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.1945 [0.041, 0.3389] sex, age, birth date, deprivation index, 16 PCs
PPM010117 PSS008692|
European Ancestry|
217 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.2467 [0.1108, 0.3736] sex, age, birth date, deprivation index, 16 PCs
PPM010118 PSS008466|
Greater Middle Eastern Ancestry|
25 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.2876 [-0.7969, 0.9331] sex, age, birth date, deprivation index, 16 PCs
PPM010119 PSS008246|
South Asian Ancestry|
159 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.09 [-0.0776, 0.2527] sex, age, birth date, deprivation index, 16 PCs
PPM010120 PSS008024|
East Asian Ancestry|
73 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.0694 [-0.2047, 0.3335] sex, age, birth date, deprivation index, 16 PCs
PPM010121 PSS007810|
African Ancestry|
49 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.212 [-0.1676, 0.5368] sex, age, birth date, deprivation index, 16 PCs
PPM010122 PSS008914|
African Ancestry|
61 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: PQ interval Partial Correlation (partial-r): 0.2774 [-0.0331, 0.539] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008466 25 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009138 181 individuals European Poland (NE Europe) UKB
PSS009364 992 individuals European UK (+ Ireland) UKB
PSS008692 217 individuals European Italy (South Europe) UKB
PSS008246 159 individuals South Asian India (South Asia) UKB
PSS008914 61 individuals African unspecified Nigeria (West Africa) UKB
PSS008024 73 individuals East Asian China (East Asia) UKB
PSS007810 49 individuals African American or Afro-Caribbean Carribean UKB