Polygenic Score (PGS) ID: PGS001906

Predicted Trait
Reported Trait QTC interval
Mapped Trait(s) QT interval (EFO_0004682)
Additional Trait Information physical measures QTC interval
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-PLR_ECG_QTC_interval
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 641
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010131 PSS009366|
European Ancestry|
1,040 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): 0.2353 [0.1765, 0.2925] sex, age, birth date, deprivation index, 16 PCs
PPM010132 PSS009140|
European Ancestry|
191 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): 0.2876 [0.1438, 0.4196] sex, age, birth date, deprivation index, 16 PCs
PPM010133 PSS008694|
European Ancestry|
225 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): 0.1528 [0.0161, 0.2839] sex, age, birth date, deprivation index, 16 PCs
PPM010135 PSS008248|
South Asian Ancestry|
165 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): -0.0987 [-0.2576, 0.0654] sex, age, birth date, deprivation index, 16 PCs
PPM010136 PSS008026|
East Asian Ancestry|
72 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): 0.2317 [-0.044, 0.4746] sex, age, birth date, deprivation index, 16 PCs
PPM010137 PSS007812|
African Ancestry|
49 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): -0.0515 [-0.4103, 0.321] sex, age, birth date, deprivation index, 16 PCs
PPM010138 PSS008916|
African Ancestry|
61 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): 0.1979 [-0.1168, 0.4766] sex, age, birth date, deprivation index, 16 PCs
PPM010134 PSS008468|
Greater Middle Eastern Ancestry|
26 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: QTC interval Partial Correlation (partial-r): 0.5901 [-0.425, 0.9478] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007812 49 individuals African American or Afro-Caribbean Carribean UKB
PSS009140 191 individuals European Poland (NE Europe) UKB
PSS008916 61 individuals African unspecified Nigeria (West Africa) UKB
PSS009366 1,040 individuals European UK (+ Ireland) UKB
PSS008694 225 individuals European Italy (South Europe) UKB
PSS008248 165 individuals South Asian India (South Asia) UKB
PSS008468 26 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS008026 72 individuals East Asian China (East Asia) UKB