Polygenic Score (PGS) ID: PGS001921

Predicted Trait
Reported Trait Fractured/broken bones in last 5 years
Mapped Trait(s) bone fracture (EFO_0003931)
Additional Trait Information injuries & poisonings
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-PLR_fracture_5y
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 7,965
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010247 PSS009408|
European Ancestry|
19,908 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): 0.0619 [0.048, 0.0757] sex, age, birth date, deprivation index, 16 PCs
PPM010248 PSS009182|
European Ancestry|
4,090 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): 0.0308 [0.0, 0.0614] sex, age, birth date, deprivation index, 16 PCs
PPM010249 PSS008736|
European Ancestry|
6,601 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): 0.0415 [0.0173, 0.0656] sex, age, birth date, deprivation index, 16 PCs
PPM010250 PSS008510|
Greater Middle Eastern Ancestry|
1,135 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): 0.0646 [0.0059, 0.1229] sex, age, birth date, deprivation index, 16 PCs
PPM010251 PSS008288|
South Asian Ancestry|
6,146 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): 0.0371 [0.0121, 0.0621] sex, age, birth date, deprivation index, 16 PCs
PPM010252 PSS008065|
East Asian Ancestry|
1,778 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): 0.0298 [-0.017, 0.0764] sex, age, birth date, deprivation index, 16 PCs
PPM010253 PSS007852|
African Ancestry|
2,435 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): 0.0143 [-0.0256, 0.0542] sex, age, birth date, deprivation index, 16 PCs
PPM010254 PSS008956|
African Ancestry|
3,821 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Fractured/broken bones in last 5 years Partial Correlation (partial-r): -0.0077 [-0.0395, 0.0241] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007852 2,435 individuals African American or Afro-Caribbean Carribean UKB
PSS008510 1,135 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009408 19,908 individuals European UK (+ Ireland) UKB
PSS008956 3,821 individuals African unspecified Nigeria (West Africa) UKB
PSS009182 4,090 individuals European Poland (NE Europe) UKB
PSS008288 6,146 individuals South Asian India (South Asia) UKB
PSS008065 1,778 individuals East Asian China (East Asia) UKB
PSS008736 6,601 individuals European Italy (South Europe) UKB