Polygenic Score (PGS) ID: PGS001927

Predicted Trait
Reported Trait Hand grip strength (mean of both)
Mapped Trait(s) grip strength measurement (EFO_0006941)
Additional Trait Information physical measures
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-PLR_hand_grip_strength
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 73,846
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010291 PSS009413|
European Ancestry|
19,855 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.2515 [0.2384, 0.2645] sex, age, birth date, deprivation index, 16 PCs
PPM010292 PSS009187|
European Ancestry|
4,105 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.2485 [0.2195, 0.2771] sex, age, birth date, deprivation index, 16 PCs
PPM010293 PSS008741|
European Ancestry|
6,598 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.2292 [0.2062, 0.252] sex, age, birth date, deprivation index, 16 PCs
PPM010294 PSS008515|
Greater Middle Eastern Ancestry|
1,168 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.1973 [0.1411, 0.2523] sex, age, birth date, deprivation index, 16 PCs
PPM010296 PSS008070|
East Asian Ancestry|
1,799 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.1616 [0.116, 0.2065] sex, age, birth date, deprivation index, 16 PCs
PPM010297 PSS007857|
African Ancestry|
2,448 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.0843 [0.0446, 0.1236] sex, age, birth date, deprivation index, 16 PCs
PPM010298 PSS008961|
African Ancestry|
3,849 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.0651 [0.0334, 0.0965] sex, age, birth date, deprivation index, 16 PCs
PPM010295 PSS008293|
South Asian Ancestry|
6,223 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Hand grip strength (mean of both) Partial Correlation (partial-r): 0.1688 [0.1445, 0.1929] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009413 19,855 individuals European UK (+ Ireland) UKB
PSS008070 1,799 individuals East Asian China (East Asia) UKB
PSS008741 6,598 individuals European Italy (South Europe) UKB
PSS008293 6,223 individuals South Asian India (South Asia) UKB
PSS007857 2,448 individuals African American or Afro-Caribbean Carribean UKB
PSS009187 4,105 individuals European Poland (NE Europe) UKB
PSS008961 3,849 individuals African unspecified Nigeria (West Africa) UKB
PSS008515 1,168 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB