Polygenic Score (PGS) ID: PGS001974

Predicted Trait
Reported Trait Potassium in urine
Mapped Trait(s) urinary potassium measurement (EFO_0010952)
Additional Trait Information biological measures
Released in PGS Catalog: Jan. 10, 2022
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Score Details

Score Construction
PGS Name portability-PLR_log_potassium_urine
Development Method
Name Penalized regression (bigstatsr)
Parameters HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 21,512
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM010667 PSS009463|
European Ancestry|
19,363 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0706 [0.0565, 0.0846] sex, age, birth date, deprivation index, 16 PCs
PPM010668 PSS009237|
European Ancestry|
3,970 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0851 [0.0541, 0.116] sex, age, birth date, deprivation index, 16 PCs
PPM010669 PSS008791|
European Ancestry|
6,432 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0709 [0.0465, 0.0952] sex, age, birth date, deprivation index, 16 PCs
PPM010671 PSS008343|
South Asian Ancestry|
6,020 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0626 [0.0373, 0.0877] sex, age, birth date, deprivation index, 16 PCs
PPM010672 PSS008120|
East Asian Ancestry|
1,743 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0368 [-0.0104, 0.0839] sex, age, birth date, deprivation index, 16 PCs
PPM010673 PSS007907|
African Ancestry|
2,382 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0381 [-0.0022, 0.0783] sex, age, birth date, deprivation index, 16 PCs
PPM010674 PSS009011|
African Ancestry|
3,772 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0225 [-0.0095, 0.0545] sex, age, birth date, deprivation index, 16 PCs
PPM010670 PSS008565|
Greater Middle Eastern Ancestry|
1,146 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Potassium in urine Partial Correlation (partial-r): 0.0884 [0.0302, 0.1461] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009011 3,772 individuals African unspecified Nigeria (West Africa) UKB
PSS009237 3,970 individuals European Poland (NE Europe) UKB
PSS008565 1,146 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009463 19,363 individuals European UK (+ Ireland) UKB
PSS008791 6,432 individuals European Italy (South Europe) UKB
PSS008343 6,020 individuals South Asian India (South Asia) UKB
PSS008120 1,743 individuals East Asian China (East Asia) UKB
PSS007907 2,382 individuals African American or Afro-Caribbean Carribean UKB