Polygenic Score (PGS) ID: PGS002040

Predicted Trait
Reported Trait Retinal detachments and defects
Mapped Trait(s) retinal detachment (EFO_0005773)
Additional Trait Information sense organs
Released in PGS Catalog: Jan. 10, 2022
Download Score FTP directory
Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name portability-ldpred2_361
Development Method
Name LDpred2 (bigsnpr)
Parameters LDpred2-auto using HapMap3 variants
Variants
Original Genome Build GRCh37
Number of Variants 706,872
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000263
Citation (link to publication) Privé F et al. Am J Hum Genet (2022)
Ancestry Distribution
Score Development/Training
European: 100%
391,124 individuals (100%)
PGS Evaluation
European: 37.5%
African: 25%
East Asian: 12.5%
Greater Middle Eastern: 12.5%
South Asian: 12.5%
8 Sample Sets

Development Samples

Score Development/Training
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
391,124 individuals European UK (+ Ireland) UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM011186 PSS009303|
European Ancestry|
19,445 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): 0.0276 [0.0135, 0.0416] sex, age, birth date, deprivation index, 16 PCs
PPM011187 PSS009077|
European Ancestry|
4,055 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): 0.0184 [-0.0125, 0.0492] sex, age, birth date, deprivation index, 16 PCs
PPM011188 PSS008631|
European Ancestry|
6,514 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): 0.0125 [-0.0119, 0.0368] sex, age, birth date, deprivation index, 16 PCs
PPM011189 PSS008405|
Greater Middle Eastern Ancestry|
1,169 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): -0.0028 [-0.0607, 0.055] sex, age, birth date, deprivation index, 16 PCs
PPM011190 PSS008185|
South Asian Ancestry|
6,095 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): 0.0276 [0.0024, 0.0527] sex, age, birth date, deprivation index, 16 PCs
PPM011191 PSS007969|
East Asian Ancestry|
1,773 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): 0.0368 [-0.0101, 0.0835] sex, age, birth date, deprivation index, 16 PCs
PPM011192 PSS007751|
African Ancestry|
2,384 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): 0.0222 [-0.0181, 0.0625] sex, age, birth date, deprivation index, 16 PCs
PPM011193 PSS008855|
African Ancestry|
3,743 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Retinal detachments and defects Partial Correlation (partial-r): 0.0024 [-0.0297, 0.0345] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007751 2,384 individuals African American or Afro-Caribbean Carribean UKB
PSS009077 4,055 individuals European Poland (NE Europe) UKB
PSS008405 1,169 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS009303 19,445 individuals European UK (+ Ireland) UKB
PSS008631 6,514 individuals European Italy (South Europe) UKB
PSS008185 6,095 individuals South Asian India (South Asia) UKB
PSS008855 3,743 individuals African unspecified Nigeria (West Africa) UKB
PSS007969 1,773 individuals East Asian China (East Asia) UKB