Polygenic Score (PGS) ID: PGS002471

Predicted Trait
Reported Trait Tanning
Mapped Trait(s) suntan (EFO_0004279)
Released in PGS Catalog: June 9, 2022
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Score Details

Score Construction
PGS Name pigment_TANNING.P+T.0.001
Development Method
Name Pruning + Thresholding
Parameters p < 0.001
Variants
Original Genome Build GRCh37
Number of Variants 20,040
Effect Weight Type BETA
PGS Source
PGS Catalog Publication (PGP) ID PGP000332
Citation (link to publication) Weissbrod O et al. Nat Genet (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
330,738 individuals (100%)
PGS Evaluation
African: 25%
East Asian: 25%
European: 25%
South Asian: 25%
4 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
330,738 individuals European UKB

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM013599 PSS009843|
African Ancestry|
4,649 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Tanning Incremental R2 (full model vs. covariates alone): 0.0 age, sex, age‚age*sex, assessment center, genotyping array, 10 PCs
PPM013648 PSS009844|
East Asian Ancestry|
864 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Tanning Incremental R2 (full model vs. covariates alone): 0.0011 age, sex, age‚age*sex, assessment center, genotyping array, 10 PCs
PPM013697 PSS009845|
European Ancestry|
42,556 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Tanning Incremental R2 (full model vs. covariates alone): 0.0729 age, sex, age‚age*sex, assessment center, genotyping array, 10 PCs
PPM013746 PSS009846|
South Asian Ancestry|
6,976 individuals
PGP000332 |
Weissbrod O et al. Nat Genet (2022)
Reported Trait: Tanning Incremental R2 (full model vs. covariates alone): 0.0001 age, sex, age‚age*sex, assessment center, genotyping array, 10 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009844 864 individuals East Asian UKB
PSS009845 42,556 individuals European Non-British European UKB
PSS009846 6,976 individuals South Asian UKB
PSS009843 4,649 individuals African unspecified UKB