Polygenic Score (PGS) ID: PGS002929

Predicted Trait
Reported Trait Fasting Plasma Glucose
Mapped Trait(s) fasting blood glucose measurement (EFO_0004465)
Additional Trait Information Fast Plasma glucose; Quantitative
Released in PGS Catalog: Nov. 23, 2022
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Score Details

Score Construction
PGS Name ExPRSweb_FPG_MAGIC-FastingGlucose_LASSOSUM_MGI_20211120
Development Method
Name lassosum
Parameters Lassosum 0.4.4 (MAF >= 1%; autosomal variants only)s=1;Lambda=0.001
Variants
Original Genome Build GRCh37
Number of Variants 71,791
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000393
Citation (link to publication) Ma Y et al. Am J Hum Genet (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
46,186 individuals (100%)
Score Development/Training
European: 100%
284 individuals (100%)
PGS Evaluation
European: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
GWAS Catalog: GCST000568
46,186 individuals European NR
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
284 individuals European MGI GLUCOSE, FASTING; Quantitative

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM015808 PSS010004|
European Ancestry|
286 individuals
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Reported Trait: Fasting Plasma Glucose β: 0.864 (0.634) : 0.00726 SEX,AGE,Batch,PC1,PC2,PC3,PC4

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010004 GLUCOSE, FASTING; Quantitative 286 individuals European MGI