Polygenic Score (PGS) ID: PGS003116

Predicted Trait
Reported Trait Type 2 Diabetes
Mapped Trait(s) type 2 diabetes mellitus (MONDO_0005148)
Additional Trait Information T2D; Binary
Released in PGS Catalog: Nov. 23, 2022
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Score Details

Score Construction
PGS Name ExPRSweb_T2D_30054458-GCST006867_PLINK_UKB_20211120
Development Method
Parameters LD Clumping through Plink1.9 & P-value threshold <=1.00e-01
Original Genome Build GRCh37
Number of Variants 31,462
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000393
Citation (link to publication) Ma Y et al. Am J Hum Genet (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
61,714 individuals (100%)
Score Development/Training
European: 100%
203,169 individuals (100%)
PGS Evaluation
European: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
GWAS Catalog: GCST006867
Europe PMC: 30054458
  • 1,178 cases
  • , 60,536 controls
European NR
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
  • 9,937 cases
  • , 193,232 controls
European UKB Field ID: 2443; Binary

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
PGS Sample Set ID
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM016012 PSS010036|
European Ancestry|
203,197 individuals
PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
Reported Trait: Type 2 Diabetes OR: 3.755 [3.669, 3.844]
β: 1.32 (0.0119)
AUROC: 0.816 [0.811, 0.82] Sex,birthYear,genotyping.array,PC1,PC2,PC3,PC4

Evaluated Samples

PGS Sample Set ID
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010036 Field ID: 2443; Binary
  • 9,797 cases
  • , 193,400 controls
European UKB