Polygenic Score (PGS) ID: PGS003263

Predicted Trait
Reported Trait Estimated glomerular filtration rate (Creatine)
Mapped Trait(s)
Additional Trait Information eGFRcrea; Quantitative
Released in PGS Catalog: Nov. 23, 2022
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Terms and Licenses
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Score Details

Score Construction
PGS Name ExPRSweb_Creatine_eGFRcrea-overall-IV-2GC_PRSCS_MGI_20211120
Development Method
Name PRS-CS
Parameters PRS-CS (auto)_traiteGFR_prefixeGFRcrea_overall_IV_2GC
Variants
Original Genome Build GRCh37
Number of Variants 932,548
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000393
Citation (link to publication) Ma Y et al. Am J Hum Genet (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
133,814 individuals (100%)
Score Development/Training
European: 100%
19,026 individuals (100%)
PGS Evaluation
European: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
GWAS Catalog: GCST003372
 133,814 individuals European NR
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
— 19,026 individuals European MGI CREATININE LEVEL (LOINC: 2160-0); Quantitative — — — —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM015723 PSS009999|
European Ancestry|
20,396 individuals
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Reported Trait: Creatine β: -0.034 (0.00153) — R²: 0.0183 SEX,AGE,Batch,PC1,PC2,PC3,PC4 —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS009999 CREATININE LEVEL (LOINC: 2160-0); Quantitative — 20,396 individuals — European — MGI —