Polygenic Score (PGS) ID: PGS003372

Predicted Trait
Reported Trait Smoking cessation
Mapped Trait(s) smoking cessation (EFO_0004319)
Released in PGS Catalog: Dec. 20, 2022
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Score Details

Score Construction
PGS Name GSCAN_SmkCes_2022_PRS_WEIGHTS_EUR
Development Method
Name LDpred
Parameters NR
Variants
Original Genome Build NR
Number of Variants 1,055,802
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000410
Citation (link to publication) Saunders GRB et al. Nature (2022)
Ancestry Distribution
Source of Variant
Associations (GWAS)
European: 100%
388,313 individuals (100%)
PGS Evaluation
European: 100%
2 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
— 388,313 individuals European 28 cohorts
  • ALSPAC
  • ,AMISH
  • ,ARIC
  • ,CADD
  • ,CFS
  • ,CHS
  • ,COGEND
  • ,COPDGene
  • ,ECLIPSE
  • ,EGCUT
  • ,FINRISK
  • ,GOLDN
  • ,GeneSTAR
  • ,HCHS
  • ,HUNT
  • ,HVH
  • ,Harvard
  • ,MCTFR
  • ,METSIM
  • ,NINDS
  • ,NTR
  • ,SOL
  • ,SardiNIA
  • ,UKB
  • ,WGHS
  • ,WHI
  • ,deCODE
  • ,eMERGE

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM016228 PSS010063|
European Ancestry|
6,092 individuals
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Reported Trait: Smoking cessation OR: 1.02 (0.139) — ∆ AUC: 0.049
∆ R^2: 0.026		 — —
PPM022472 PSS011952|
European Ancestry|
15,780 individuals
 PGP000717 |
Venkateswaran V et al. Transl Psychiatry (2024)
|Ext.		 Reported Trait: Tobacco use disorder β: -0.11 (0.019) — — — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011952 — — 15,780 individuals — European — UCLA T1
PSS010063 — — 6,092 individuals — European — Add Health —