| Predicted Trait | |
| Reported Trait | Idiopathic pulmonary fibrosis |
| Mapped Trait(s) | idiopathic pulmonary fibrosis (EFO_0000768) |
| Score Construction | |
| PGS Name | PRS13_IPF |
| Development Method | |
| Name | Genome-wide significant SNPs |
| Parameters | P < 5E-08, MAF>0.05 |
| Variants | |
| Original Genome Build | NR |
| Number of Variants | 13 |
| Effect Weight Type | log(OR) |
| PGS Source | |
| PGS Catalog Publication (PGP) ID | PGP000793 |
| Citation (link to publication) | Tang L et al. Environ Res (2023) |
| Ancestry Distribution | |
| Source of Variant Associations (GWAS) | European: 100% 11,259 individuals (100%) |
| PGS Evaluation | |
| Study Identifiers | Sample Numbers | Sample Ancestry | Cohort(s) |
|---|---|---|---|
GWAS Catalog: GCST009758 Europe PMC: 31710517 |
11,259 individuals | European | NR |
|
PGS Performance Metric ID (PPM) |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|
| PPM030659 | PSS012226| Multi-ancestry (including European)| 466,155 individuals |
PGP000793 | Tang L et al. Environ Res (2023) |
Reported Trait: Incident idiopathic pulmonary fibrosis | HR: 1.7 [1.62, 1.78] | — | — | age, gender, ethnicity, annual household income, education level, employment status, residential area, smoking status, alcohol consumption, genotyping batch and the first ten genetic principal components | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS012226 | — | — | 423,648 individuals | — | European | — | UKB | — |
| PSS012226 | — | — | 21,839 individuals | — | Not reported | — | UKB | — |
| PSS012226 | — | — | 16,500 individuals | — | Asian unspecified | — | UKB | — |
| PSS012226 | — | — | 2,659 individuals | — | African American or Afro-Caribbean (Black) |
— | UKB | — |
| PSS012226 | — | — | 1,509 individuals | — | East Asian (Chinese) |
— | UKB | — |