Polygenic Score (PGS) ID: PGS018517

Predicted Trait
Reported Trait Respiratory system cancer
Mapped Trait(s) respiratory system cancer (MONDO_0000376)
Released in PGS Catalog: July 29, 2026
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Score Details

Score Construction
PGS Name TPMI_165_MegaPRS
Development Method
Name MegaPRS
Parameters NR
Variants
Original Genome Build GRCh38
Number of Variants 72,170
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000835
Citation (link to publication) Chen HH et al. Nature (2025)
Ancestry Distribution
Source of Variant
Associations (GWAS)
East Asian: 100%
342,112 individuals (100%)
Score Development/Training
East Asian: 100%
79,422 individuals (100%)
PGS Evaluation
East Asian: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
—
[
  • 6,364 cases
  • , 335,748 controls
]
,
44.56 % Male samples
 East Asian
(Han Chinese)		 TPMI
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
—
[
  • 2,126 cases
  • , 77,296 controls
]
,
45.97 % Male samples
 East Asian
(Han Chinese)		 TPMI 162, 209.21, 231.2, V10.11,C33, C34, C7A.090, D02.2, Z85.1 — — — —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM036699 PSS012424|
East Asian Ancestry|
19,878 individuals
 PGP000835 |
Chen HH et al. Nature (2025)
 Reported Trait: Cancer within the respiratory system — AUROC: 0.5884 R²: 0.00654 sex, age, array, PCs 1-10 —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS012424 162, 163, 165, 209.21, 231, V10.1, V10.2,C33, C34, C38.4, C39, C45.0, C7A.090, D02.1, D02.2, D02.3, D02.4, Z85.1, Z85.2 —
[
  • 515 cases
  • , 19,363 controls
]
,
45.92 % Male samples
 — East Asian
(Han Chinese)		 — TPMI —