Polygenic Score (PGS) ID: PGS018947

Predicted Trait
Reported Trait Other mental disorder
Mapped Trait(s) mental disorder (MONDO_0005084)
Released in PGS Catalog: July 29, 2026
Download Score FTP directory
Terms and Licenses
PGS obtained from the Catalog should be cited appropriately, and used in accordance with any licensing restrictions set by the authors. See EBI Terms of Use (https://www.ebi.ac.uk/about/terms-of-use/) for additional details.

Score Details

Score Construction
PGS Name TPMI_306_LDpred2
Development Method
Name LDpred2
Parameters NR
Variants
Original Genome Build GRCh38
Number of Variants 402,973
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000835
Citation (link to publication) Chen HH et al. Nature (2025)
Ancestry Distribution
Source of Variant
Associations (GWAS)
East Asian: 100%
294,601 individuals (100%)
Score Development/Training
East Asian: 100%
67,042 individuals (100%)
PGS Evaluation
East Asian: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
—
[
  • 28,376 cases
  • , 266,225 controls
]
,
44.82 % Male samples
 East Asian
(Han Chinese)		 TPMI
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
—
[
  • 9,903 cases
  • , 57,139 controls
]
,
46.56 % Male samples
 East Asian
(Han Chinese)		 TPMI 307, 316, 333.92, 648.4, V11.2, V11.8, V11.9, V15.4, V40.2, V40.3, V40.9, V62.85, V66.3, V67.3, V70.1, V70.2, V71.0,F54, G21.0, G44.2, O90.6, O99.31, O99.34, R45.850, Z86.59 — — — —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM037129 PSS012848|
East Asian Ancestry|
16,706 individuals
 PGP000835 |
Chen HH et al. Nature (2025)
 Reported Trait: Other mental disorder — AUROC: 0.63546 R²: 0.04397 sex, age, array, PCs 1-10 —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS012848 307, 316, 333.92, 648.4, V11.2, V11.8, V11.9, V15.4, V40.2, V40.3, V40.9, V62.85, V66.3, V67.3, V70.1, V70.2, V71.0,F54, G21.0, G44.2, O90.6, O99.31, O99.34, R45.850, Z86.59 —
[
  • 2,518 cases
  • , 14,188 controls
]
,
46.64 % Male samples
 — East Asian
(Han Chinese)		 — TPMI —