Polygenic Score (PGS) ID: PGS019316

Predicted Trait
Reported Trait Diseases of the jaws
Mapped Trait(s) jaw disease (EFO_0009468)
Released in PGS Catalog: July 29, 2026
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Score Details

Score Construction
PGS Name TPMI_526_LDpred2
Development Method
Name LDpred2
Parameters NR
Variants
Original Genome Build GRCh38
Number of Variants 939,803
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000835
Citation (link to publication) Chen HH et al. Nature (2025)
Ancestry Distribution
Source of Variant
Associations (GWAS)
East Asian: 100%
294,614 individuals (100%)
Score Development/Training
East Asian: 100%
67,161 individuals (100%)
PGS Evaluation
East Asian: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
—
[
  • 2,875 cases
  • , 291,739 controls
]
,
44.64 % Male samples
 East Asian
(Han Chinese)		 TPMI
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
—
[
  • 635 cases
  • , 66,526 controls
]
,
45.68 % Male samples
 East Asian
(Han Chinese)		 TPMI 524.6,M26.6 — — — —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM037498 PSS013222|
East Asian Ancestry|
16,830 individuals
 PGP000835 |
Chen HH et al. Nature (2025)
 Reported Trait: Diseases of the jaws — AUROC: 0.64917 R²: 0.01152 sex, age, array, PCs 1-10 —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS013222 524.0, 524.1, 524.51, 524.6, 526, 784.92,K09.0, K09.1, M26.0, M26.1, M26.51, M26.6, M27.0, M27.1, M27.2, M27.3, M27.4, M27.5, M27.8, M27.9, R68.84 —
[
  • 208 cases
  • , 16,622 controls
]
,
45.47 % Male samples
 — East Asian
(Han Chinese)		 — TPMI —