Polygenic Score (PGS) ID: PGS019457

Predicted Trait
Reported Trait Cyst of kidney acquired
Mapped Trait(s) Simple Cyst of Kidney (EFO_0008619)
Released in PGS Catalog: July 29, 2026
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Score Details

Score Construction
PGS Name TPMI_586.2_SBayesR
Development Method
Name SBayesR
Parameters NR
Variants
Original Genome Build GRCh38
Number of Variants 1,004,389
Effect Weight Type beta
PGS Source
PGS Catalog Publication (PGP) ID PGP000835
Citation (link to publication) Chen HH et al. Nature (2025)
Ancestry Distribution
Source of Variant
Associations (GWAS)
East Asian: 100%
318,294 individuals (100%)
Score Development/Training
East Asian: 100%
72,960 individuals (100%)
PGS Evaluation
East Asian: 100%
1 Sample Sets

Development Samples

Source of Variant Associations (GWAS)
Study Identifiers Sample Numbers Sample Ancestry Cohort(s)
—
[
  • 23,588 cases
  • , 294,706 controls
]
,
43.96 % Male samples
 East Asian
(Han Chinese)		 TPMI
Score Development/Training
Study Identifiers Sample Numbers Sample Ancestry Cohort(s) Phenotype Definitions & Methods Age of Study Participants Participant Follow-up Time Additional Ancestry Description Additional Sample/Cohort Information
—
[
  • 6,264 cases
  • , 66,696 controls
]
,
45.34 % Male samples
 East Asian
(Han Chinese)		 TPMI 589, 593,N11.1, N13.0, N13.4, N13.5, N13.7, N13.8, N26, N27, N28.0, N28.1, N28.8, N28.9, N29 — — — —

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM037639 PSS013354|
East Asian Ancestry|
16,706 individuals
 PGP000835 |
Chen HH et al. Nature (2025)
 Reported Trait: Cyst of kidney acquired — AUROC: 0.6192 R²: 0.0031 sex, age, array, PCs 1-10 —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS013354 593.2,N28.1 —
[
  • 123 cases
  • , 16,583 controls
]
,
44.24 % Male samples
 — East Asian
(Han Chinese)		 — TPMI —