Trait: cellulitis

Experimental Factor Ontology (EFO) Information
Identifier EFO_0003035
Description Inflammation of the dermis and subcutaneous tissues caused by a bacterial infection. Symptoms include erythema, edema, and pain to the affected area. [NCIT: C26715]
Trait category
Other disease
Synonyms 3 synonyms
  • Other cellulitis and abscess
  • cellulitis
  • cellulitis (disease)
Mapped terms 16 mapped terms
  • DOID:3488
  • HP:0100658
  • ICD10:L03
  • ICD10:L03.90
  • ICD9:682.8
  • ICD9:682.9
  • MESH:D002481
  • MONDO:0005230
  • MeSH:D002481
  • MedDRA:10007882
  • NCIT:C26715
  • NCIt:C26715
  • SCTID:128045006
  • SNOMEDCT:128045006
  • SNOMEDCT:385627004
  • Wikipedia:Cellulitis

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001869
(portability-PLR_681)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Superficial cellulitis and abscess cellulitis 131
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001869/ScoringFiles/PGS001869.txt.gz
PGS002081
(portability-ldpred2_681)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Superficial cellulitis and abscess cellulitis 640,921
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002081/ScoringFiles/PGS002081.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM009841 PGS001869
(portability-PLR_681)
PSS009345|
European Ancestry|
19,807 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.0142 sex, age, birth date, deprivation index, 16 PCs
PPM009842 PGS001869
(portability-PLR_681)
PSS009119|
European Ancestry|
4,093 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.0247 [-0.0554, 0.006] sex, age, birth date, deprivation index, 16 PCs
PPM009843 PGS001869
(portability-PLR_681)
PSS008673|
European Ancestry|
6,586 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.004 [-0.0282, 0.0201] sex, age, birth date, deprivation index, 16 PCs
PPM009844 PGS001869
(portability-PLR_681)
PSS008447|
Greater Middle Eastern Ancestry|
1,189 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.0014 [-0.0559, 0.0587] sex, age, birth date, deprivation index, 16 PCs
PPM009845 PGS001869
(portability-PLR_681)
PSS008227|
South Asian Ancestry|
6,213 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.0057 [-0.0192, 0.0306] sex, age, birth date, deprivation index, 16 PCs
PPM009846 PGS001869
(portability-PLR_681)
PSS008008|
East Asian Ancestry|
1,803 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.0207 [-0.0671, 0.0257] sex, age, birth date, deprivation index, 16 PCs
PPM009847 PGS001869
(portability-PLR_681)
PSS007792|
African Ancestry|
2,440 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.0078 [-0.0476, 0.0321] sex, age, birth date, deprivation index, 16 PCs
PPM009848 PGS001869
(portability-PLR_681)
PSS008896|
African Ancestry|
3,853 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.0033 [-0.0349, 0.0284] sex, age, birth date, deprivation index, 16 PCs
PPM011509 PGS002081
(portability-ldpred2_681)
PSS009345|
European Ancestry|
19,807 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.0247 [0.0108, 0.0386] sex, age, birth date, deprivation index, 16 PCs
PPM011510 PGS002081
(portability-ldpred2_681)
PSS009119|
European Ancestry|
4,093 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.0189 [-0.0118, 0.0496] sex, age, birth date, deprivation index, 16 PCs
PPM011511 PGS002081
(portability-ldpred2_681)
PSS008673|
European Ancestry|
6,586 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.009 [-0.0152, 0.0332] sex, age, birth date, deprivation index, 16 PCs
PPM011512 PGS002081
(portability-ldpred2_681)
PSS008447|
Greater Middle Eastern Ancestry|
1,189 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.021 [-0.0364, 0.0782] sex, age, birth date, deprivation index, 16 PCs
PPM011513 PGS002081
(portability-ldpred2_681)
PSS008227|
South Asian Ancestry|
6,213 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): 0.0082 [-0.0167, 0.0331] sex, age, birth date, deprivation index, 16 PCs
PPM011514 PGS002081
(portability-ldpred2_681)
PSS008008|
East Asian Ancestry|
1,803 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.0251 [-0.0715, 0.0213] sex, age, birth date, deprivation index, 16 PCs
PPM011516 PGS002081
(portability-ldpred2_681)
PSS008896|
African Ancestry|
3,853 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.0005 [-0.0321, 0.0312] sex, age, birth date, deprivation index, 16 PCs
PPM011515 PGS002081
(portability-ldpred2_681)
PSS007792|
African Ancestry|
2,440 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Superficial cellulitis and abscess Partial Correlation (partial-r): -0.0119 [-0.0518, 0.0279] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008008 1,803 individuals East Asian China (East Asia) UKB
PSS009119 4,093 individuals European Poland (NE Europe) UKB
PSS007792 2,440 individuals African American or Afro-Caribbean Carribean UKB
PSS009345 19,807 individuals European UK (+ Ireland) UKB
PSS008447 1,189 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS008896 3,853 individuals African unspecified Nigeria (West Africa) UKB
PSS008673 6,586 individuals European Italy (South Europe) UKB
PSS008227 6,213 individuals South Asian India (South Asia) UKB