Trait: lean body mass

Experimental Factor Ontology (EFO) Information
Identifier EFO_0004995
Description The weight of all organs and tissue in an individual less the weight of the individual's body fat.
Trait category
Other measurement
Mapped terms 2 mapped terms
  • NCIt:C71258
  • SNOMEDCT:248362003

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
Scoring File (FTP Link)
PGS001165
(GBE_INI23125)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Arm fat free mass (L) lean body mass 30,360
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001165/ScoringFiles/PGS001165.txt.gz
PGS001166
(GBE_INI23117)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Leg fat-free mass (L) lean body mass 30,340
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001166/ScoringFiles/PGS001166.txt.gz
PGS001167
(GBE_INI23113)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Leg fat-free mass (R) lean body mass 32,046
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001167/ScoringFiles/PGS001167.txt.gz
PGS001168
(GBE_INI23129)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Trunk fat free mass lean body mass 34,749
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001168/ScoringFiles/PGS001168.txt.gz
PGS001169
(GBE_INI23101)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Whole body fat free mass lean body mass 34,486
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001169/ScoringFiles/PGS001169.txt.gz
PGS001950
(portability-PLR_log_fat_free_mass)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Whole body fat-free mass lean body mass 128,827
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001950/ScoringFiles/PGS001950.txt.gz
PGS002168
(portability-ldpred2_log_fat_free_mass)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Whole body fat-free mass lean body mass 966,825
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002168/ScoringFiles/PGS002168.txt.gz
PGS003531
(cont-decay-log_fat_free_mass)
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Whole body fat-free mass lean body mass 979,739
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003531/ScoringFiles/PGS003531.txt.gz
PGS003901
(INI23101)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Whole body fat-free mass lean body mass 42,786
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003901/ScoringFiles/PGS003901.txt.gz
PGS003911
(INI23113)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Leg fat-free mass (R) lean body mass 38,493
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003911/ScoringFiles/PGS003911.txt.gz
PGS003914
(INI23117)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Leg fat-free mass (L) lean body mass 38,764
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003914/ScoringFiles/PGS003914.txt.gz
PGS003917
(INI23121)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Arm fat-free mass (R) lean body mass 38,650
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003917/ScoringFiles/PGS003917.txt.gz
PGS003920
(INI23125)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Arm fat-free mass (L) lean body mass 39,276
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003920/ScoringFiles/PGS003920.txt.gz
PGS003923
(INI23129)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Trunk fat-free mass lean body mass 42,468
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003923/ScoringFiles/PGS003923.txt.gz
PGS004376
(X23101.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Whole body fat-free mass lean body mass 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004376/ScoringFiles/PGS004376.txt.gz
PGS004387
(X23113.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Leg fat-free mass (right) lean body mass 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004387/ScoringFiles/PGS004387.txt.gz
PGS004391
(X23117.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Leg fat-free mass (left) lean body mass 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004391/ScoringFiles/PGS004391.txt.gz
PGS004395
(X23121.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Arm fat-free mass (right) lean body mass 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004395/ScoringFiles/PGS004395.txt.gz
PGS004399
(X23125.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Arm fat-free mass (left) lean body mass 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004399/ScoringFiles/PGS004399.txt.gz
PGS004403
(X23129.score)
PGP000561 |
Jung H et al. Commun Biol (2024)
Trunk fat-free mass lean body mass 1,059,939
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004403/ScoringFiles/PGS004403.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008548 PGS001165
(GBE_INI23125)
PSS005154|
South Asian Ancestry|
7,647 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (L) : 0.66424 [0.65212, 0.67635]
Incremental R2 (full-covars): 0.03058
PGS R2 (no covariates): 0.02351 [0.01688, 0.03014]
age, sex, UKB array type, Genotype PCs
PPM008545 PGS001165
(GBE_INI23125)
PSS005151|
African Ancestry|
6,299 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (L) : 0.5894 [0.57408, 0.60472]
Incremental R2 (full-covars): 0.00951
PGS R2 (no covariates): 0.01764 [0.0113, 0.02399]
age, sex, UKB array type, Genotype PCs
PPM008546 PGS001165
(GBE_INI23125)
PSS005152|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (L) : 0.74448 [0.72359, 0.76538]
Incremental R2 (full-covars): 0.0034
PGS R2 (no covariates): 0.01331 [0.00252, 0.0241]
age, sex, UKB array type, Genotype PCs
PPM008547 PGS001165
(GBE_INI23125)
PSS005153|
European Ancestry|
24,457 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (L) : 0.73779 [0.7322, 0.74339]
Incremental R2 (full-covars): 0.03937
PGS R2 (no covariates): 0.0417 [0.03684, 0.04656]
age, sex, UKB array type, Genotype PCs
PPM008549 PGS001165
(GBE_INI23125)
PSS005155|
European Ancestry|
66,234 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (L) : 0.73264 [0.72918, 0.73609]
Incremental R2 (full-covars): 0.04461
PGS R2 (no covariates): 0.04544 [0.04237, 0.04851]
age, sex, UKB array type, Genotype PCs
PPM008550 PGS001166
(GBE_INI23117)
PSS005111|
African Ancestry|
6,303 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (L) : 0.53187 [0.51528, 0.54846]
Incremental R2 (full-covars): 0.00841
PGS R2 (no covariates): 0.0152 [0.0093, 0.0211]
age, sex, UKB array type, Genotype PCs
PPM008551 PGS001166
(GBE_INI23117)
PSS005112|
East Asian Ancestry|
1,679 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (L) : 0.72443 [0.7022, 0.74666]
Incremental R2 (full-covars): 0.00342
PGS R2 (no covariates): 0.01608 [0.00425, 0.0279]
age, sex, UKB array type, Genotype PCs
PPM008552 PGS001166
(GBE_INI23117)
PSS005113|
European Ancestry|
24,461 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (L) : 0.7007 [0.69448, 0.70692]
Incremental R2 (full-covars): 0.0443
PGS R2 (no covariates): 0.0464 [0.0413, 0.0515]
age, sex, UKB array type, Genotype PCs
PPM008553 PGS001166
(GBE_INI23117)
PSS005114|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (L) : 0.65024 [0.63775, 0.66272]
Incremental R2 (full-covars): 0.03375
PGS R2 (no covariates): 0.0265 [0.01948, 0.03352]
age, sex, UKB array type, Genotype PCs
PPM008554 PGS001166
(GBE_INI23117)
PSS005115|
European Ancestry|
66,253 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (L) : 0.69394 [0.69009, 0.69779]
Incremental R2 (full-covars): 0.05093
PGS R2 (no covariates): 0.05064 [0.04742, 0.05387]
age, sex, UKB array type, Genotype PCs
PPM008555 PGS001167
(GBE_INI23113)
PSS005096|
African Ancestry|
6,305 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (R) : 0.53747 [0.52099, 0.55395]
Incremental R2 (full-covars): 0.00943
PGS R2 (no covariates): 0.01562 [0.00964, 0.0216]
age, sex, UKB array type, Genotype PCs
PPM008556 PGS001167
(GBE_INI23113)
PSS005097|
East Asian Ancestry|
1,680 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (R) : 0.72975 [0.70788, 0.75163]
Incremental R2 (full-covars): 0.00171
PGS R2 (no covariates): 0.01431 [0.00314, 0.02549]
age, sex, UKB array type, Genotype PCs
PPM008557 PGS001167
(GBE_INI23113)
PSS005098|
European Ancestry|
24,461 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (R) : 0.70588 [0.69974, 0.71201]
Incremental R2 (full-covars): 0.04477
PGS R2 (no covariates): 0.0455 [0.04045, 0.05056]
age, sex, UKB array type, Genotype PCs
PPM008558 PGS001167
(GBE_INI23113)
PSS005099|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (R) : 0.65682 [0.64451, 0.66914]
Incremental R2 (full-covars): 0.03381
PGS R2 (no covariates): 0.02711 [0.02002, 0.0342]
age, sex, UKB array type, Genotype PCs
PPM008559 PGS001167
(GBE_INI23113)
PSS005100|
European Ancestry|
66,257 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat-free mass (R) : 0.69994 [0.69615, 0.70373]
Incremental R2 (full-covars): 0.05103
PGS R2 (no covariates): 0.04961 [0.04641, 0.0528]
age, sex, UKB array type, Genotype PCs
PPM008560 PGS001168
(GBE_INI23129)
PSS005171|
African Ancestry|
6,298 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat-free mass : 0.59642 [0.58127, 0.61157]
Incremental R2 (full-covars): 0.01057
PGS R2 (no covariates): 0.0178 [0.01143, 0.02418]
age, sex, UKB array type, Genotype PCs
PPM008561 PGS001168
(GBE_INI23129)
PSS005172|
East Asian Ancestry|
1,677 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat-free mass : 0.73696 [0.71556, 0.75835]
Incremental R2 (full-covars): 0.01146
PGS R2 (no covariates): 0.0221 [0.00833, 0.03588]
age, sex, UKB array type, Genotype PCs
PPM008562 PGS001168
(GBE_INI23129)
PSS005173|
European Ancestry|
24,445 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat-free mass : 0.76298 [0.75784, 0.76812]
Incremental R2 (full-covars): 0.04792
PGS R2 (no covariates): 0.04719 [0.04205, 0.05233]
age, sex, UKB array type, Genotype PCs
PPM008563 PGS001168
(GBE_INI23129)
PSS005174|
South Asian Ancestry|
7,645 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat-free mass : 0.69077 [0.67939, 0.70215]
Incremental R2 (full-covars): 0.03748
PGS R2 (no covariates): 0.03123 [0.02365, 0.03881]
age, sex, UKB array type, Genotype PCs
PPM008564 PGS001168
(GBE_INI23129)
PSS005175|
European Ancestry|
66,210 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat-free mass : 0.76832 [0.76525, 0.77138]
Incremental R2 (full-covars): 0.05259
PGS R2 (no covariates): 0.05253 [0.04925, 0.05581]
age, sex, UKB array type, Genotype PCs
PPM008565 PGS001169
(GBE_INI23101)
PSS005046|
African Ancestry|
6,304 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat-free mass : 0.60157 [0.58655, 0.61659]
Incremental R2 (full-covars): 0.01013
PGS R2 (no covariates): 0.01873 [0.0122, 0.02526]
age, sex, UKB array type, Genotype PCs
PPM008566 PGS001169
(GBE_INI23101)
PSS005047|
East Asian Ancestry|
1,680 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat-free mass : 0.75252 [0.73217, 0.77286]
Incremental R2 (full-covars): 0.00794
PGS R2 (no covariates): 0.01884 [0.00608, 0.03161]
age, sex, UKB array type, Genotype PCs
PPM008567 PGS001169
(GBE_INI23101)
PSS005048|
European Ancestry|
24,463 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat-free mass : 0.75918 [0.75397, 0.76439]
Incremental R2 (full-covars): 0.04637
PGS R2 (no covariates): 0.04707 [0.04193, 0.0522]
age, sex, UKB array type, Genotype PCs
PPM008568 PGS001169
(GBE_INI23101)
PSS005049|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat-free mass : 0.69559 [0.68435, 0.70683]
Incremental R2 (full-covars): 0.03597
PGS R2 (no covariates): 0.02818 [0.02096, 0.03541]
age, sex, UKB array type, Genotype PCs
PPM008569 PGS001169
(GBE_INI23101)
PSS005050|
European Ancestry|
66,262 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat-free mass : 0.76094 [0.75779, 0.76409]
Incremental R2 (full-covars): 0.05193
PGS R2 (no covariates): 0.05222 [0.04895, 0.05548]
age, sex, UKB array type, Genotype PCs
PPM010476 PGS001950
(portability-PLR_log_fat_free_mass)
PSS009217|
European Ancestry|
4,072 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.449 [0.424, 0.4732] sex, age, birth date, deprivation index, 16 PCs
PPM010477 PGS001950
(portability-PLR_log_fat_free_mass)
PSS008771|
European Ancestry|
6,538 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.4291 [0.4091, 0.4487] sex, age, birth date, deprivation index, 16 PCs
PPM010478 PGS001950
(portability-PLR_log_fat_free_mass)
PSS008545|
Greater Middle Eastern Ancestry|
1,152 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.3709 [0.3195, 0.42] sex, age, birth date, deprivation index, 16 PCs
PPM010479 PGS001950
(portability-PLR_log_fat_free_mass)
PSS008323|
South Asian Ancestry|
6,185 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.3879 [0.3665, 0.4089] sex, age, birth date, deprivation index, 16 PCs
PPM010480 PGS001950
(portability-PLR_log_fat_free_mass)
PSS008100|
East Asian Ancestry|
1,782 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.3154 [0.2727, 0.3568] sex, age, birth date, deprivation index, 16 PCs
PPM010481 PGS001950
(portability-PLR_log_fat_free_mass)
PSS007887|
African Ancestry|
2,420 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.2517 [0.2139, 0.2888] sex, age, birth date, deprivation index, 16 PCs
PPM010482 PGS001950
(portability-PLR_log_fat_free_mass)
PSS008991|
African Ancestry|
3,799 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.1941 [0.1633, 0.2246] sex, age, birth date, deprivation index, 16 PCs
PPM010475 PGS001950
(portability-PLR_log_fat_free_mass)
PSS009443|
European Ancestry|
19,637 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.458 [0.4469, 0.469] sex, age, birth date, deprivation index, 16 PCs
PPM012191 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS009443|
European Ancestry|
19,637 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.447 [0.4358, 0.4581] sex, age, birth date, deprivation index, 16 PCs
PPM012192 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS009217|
European Ancestry|
4,072 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.4493 [0.4244, 0.4735] sex, age, birth date, deprivation index, 16 PCs
PPM012193 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS008771|
European Ancestry|
6,538 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.4231 [0.4029, 0.4428] sex, age, birth date, deprivation index, 16 PCs
PPM012194 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS008545|
Greater Middle Eastern Ancestry|
1,152 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.3653 [0.3138, 0.4148] sex, age, birth date, deprivation index, 16 PCs
PPM012195 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS008323|
South Asian Ancestry|
6,185 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.3787 [0.3571, 0.3999] sex, age, birth date, deprivation index, 16 PCs
PPM012196 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS008100|
East Asian Ancestry|
1,782 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.3169 [0.2743, 0.3583] sex, age, birth date, deprivation index, 16 PCs
PPM012197 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS007887|
African Ancestry|
2,420 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.2494 [0.2115, 0.2866] sex, age, birth date, deprivation index, 16 PCs
PPM012198 PGS002168
(portability-ldpred2_log_fat_free_mass)
PSS008991|
African Ancestry|
3,799 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat-free mass Partial Correlation (partial-r): 0.1911 [0.1602, 0.2216] sex, age, birth date, deprivation index, 16 PCs
PPM017459 PGS003531
(cont-decay-log_fat_free_mass)
PSS010895|
European Ancestry|
19,661 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.2 sex, age, deprivation index, PC1-16
PPM017543 PGS003531
(cont-decay-log_fat_free_mass)
PSS010811|
European Ancestry|
4,062 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.2 sex, age, deprivation index, PC1-16
PPM017627 PGS003531
(cont-decay-log_fat_free_mass)
PSS010643|
European Ancestry|
6,376 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.18 sex, age, deprivation index, PC1-16
PPM017711 PGS003531
(cont-decay-log_fat_free_mass)
PSS010559|
Greater Middle Eastern Ancestry|
1,124 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.15 sex, age, deprivation index, PC1-16
PPM017795 PGS003531
(cont-decay-log_fat_free_mass)
PSS010223|
European Ancestry|
2,318 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.19 sex, age, deprivation index, PC1-16
PPM017879 PGS003531
(cont-decay-log_fat_free_mass)
PSS010475|
South Asian Ancestry|
6,134 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.15 sex, age, deprivation index, PC1-16
PPM017963 PGS003531
(cont-decay-log_fat_free_mass)
PSS010391|
East Asian Ancestry|
1,770 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.09 sex, age, deprivation index, PC1-16
PPM018047 PGS003531
(cont-decay-log_fat_free_mass)
PSS010307|
African Ancestry|
2,408 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.07 sex, age, deprivation index, PC1-16
PPM018131 PGS003531
(cont-decay-log_fat_free_mass)
PSS010727|
African Ancestry|
3,771 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat-free mass partial-R2: 0.03 sex, age, deprivation index, PC1-16
PPM018824 PGS003901
(INI23101)
PSS011150|
European Ancestry|
66,614 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat-free mass : 0.7632 [0.76009, 0.76632]
PGS R2 (no covariates): 0.0533 [0.05, 0.05659]
Incremental R2 (full-covars): 0.05378
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018825 PGS003901
(INI23101)
PSS011108|
European Ancestry|
2,835 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat-free mass : 0.76255 [0.74746, 0.77764]
PGS R2 (no covariates): 0.06277 [0.04568, 0.07986]
Incremental R2 (full-covars): 0.05616
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018826 PGS003901
(INI23101)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat-free mass : 0.69472 [0.66891, 0.72052]
PGS R2 (no covariates): 0.02952 [0.01261, 0.04643]
Incremental R2 (full-covars): 0.04458
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018827 PGS003901
(INI23101)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat-free mass : 0.5853 [0.54969, 0.6209]
PGS R2 (no covariates): 0.00696 [-0.00234, 0.01625]
Incremental R2 (full-covars): 0.00196
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018828 PGS003901
(INI23101)
PSS011176|
Multi-ancestry (excluding European)|
7,842 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat-free mass : 0.75091 [0.74146, 0.76036]
PGS R2 (no covariates): 0.03965 [0.03128, 0.04803]
Incremental R2 (full-covars): 0.0398
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018875 PGS003911
(INI23113)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (right) : 0.70978 [0.69199, 0.72758]
PGS R2 (no covariates): 0.05905 [0.04241, 0.07569]
Incremental R2 (full-covars): 0.05628
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018876 PGS003911
(INI23113)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (right) : 0.64574 [0.61687, 0.67461]
PGS R2 (no covariates): 0.02445 [0.00898, 0.03992]
Incremental R2 (full-covars): 0.03723
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018877 PGS003911
(INI23113)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (right) : 0.51803 [0.4791, 0.55696]
PGS R2 (no covariates): 0.00607 [-0.00262, 0.01476]
Incremental R2 (full-covars): -0.00277
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018878 PGS003911
(INI23113)
PSS011177|
Multi-ancestry (excluding European)|
7,841 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (right) : 0.70396 [0.69308, 0.71484]
PGS R2 (no covariates): 0.03588 [0.02789, 0.04388]
Incremental R2 (full-covars): 0.03684
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018874 PGS003911
(INI23113)
PSS011122|
European Ancestry|
66,610 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (right) : 0.70245 [0.69869, 0.70621]
PGS R2 (no covariates): 0.05367 [0.05037, 0.05697]
Incremental R2 (full-covars): 0.0537
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018889 PGS003914
(INI23117)
PSS011124|
European Ancestry|
66,607 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (left) : 0.69704 [0.69323, 0.70085]
PGS R2 (no covariates): 0.05413 [0.05082, 0.05744]
Incremental R2 (full-covars): 0.05384
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018890 PGS003914
(INI23117)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (left) : 0.70089 [0.68266, 0.71911]
PGS R2 (no covariates): 0.05971 [0.04299, 0.07643]
Incremental R2 (full-covars): 0.05733
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018892 PGS003914
(INI23117)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (left) : 0.50439 [0.46489, 0.54389]
PGS R2 (no covariates): 0.00566 [-0.00274, 0.01405]
Incremental R2 (full-covars): -0.00128
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018893 PGS003914
(INI23117)
PSS011177|
Multi-ancestry (excluding European)|
7,841 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (left) : 0.69898 [0.68796, 0.71]
PGS R2 (no covariates): 0.03894 [0.03063, 0.04724]
Incremental R2 (full-covars): 0.03936
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018891 PGS003914
(INI23117)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat-free mass (left) : 0.65569 [0.62741, 0.68396]
PGS R2 (no covariates): 0.02557 [0.00977, 0.04137]
Incremental R2 (full-covars): 0.04081
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018904 PGS003917
(INI23121)
PSS011135|
European Ancestry|
66,605 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (right) : 0.76312 [0.76, 0.76624]
PGS R2 (no covariates): 0.04183 [0.03888, 0.04479]
Incremental R2 (full-covars): 0.04246
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018905 PGS003917
(INI23121)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (right) : 0.76262 [0.74753, 0.7777]
PGS R2 (no covariates): 0.05531 [0.03914, 0.07148]
Incremental R2 (full-covars): 0.04628
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018907 PGS003917
(INI23121)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (right) : 0.64409 [0.61204, 0.67615]
PGS R2 (no covariates): 0.00928 [-0.00143, 0.02]
Incremental R2 (full-covars): 0.00249
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018908 PGS003917
(INI23121)
PSS011178|
Multi-ancestry (excluding European)|
7,840 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (right) : 0.76131 [0.75219, 0.77043]
PGS R2 (no covariates): 0.03229 [0.02468, 0.0399]
Incremental R2 (full-covars): 0.03087
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018906 PGS003917
(INI23121)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (right) : 0.72486 [0.70111, 0.74862]
PGS R2 (no covariates): 0.02572 [0.00987, 0.04157]
Incremental R2 (full-covars): 0.03555
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018919 PGS003920
(INI23125)
PSS011130|
European Ancestry|
66,591 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (left) : 0.73845 [0.73506, 0.74183]
PGS R2 (no covariates): 0.0462 [0.04311, 0.04928]
Incremental R2 (full-covars): 0.04641
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018920 PGS003920
(INI23125)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (left) : 0.74029 [0.72403, 0.75655]
PGS R2 (no covariates): 0.0595 [0.0428, 0.07619]
Incremental R2 (full-covars): 0.0506
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018921 PGS003920
(INI23125)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (left) : 0.67307 [0.64587, 0.70027]
PGS R2 (no covariates): 0.03556 [0.01712, 0.05401]
Incremental R2 (full-covars): 0.0433
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018922 PGS003920
(INI23125)
PSS011157|
African Ancestry|
1,168 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (left) : 0.58307 [0.54734, 0.6188]
PGS R2 (no covariates): 0.00737 [-0.00219, 0.01694]
Incremental R2 (full-covars): 0.00113
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018923 PGS003920
(INI23125)
PSS011162|
Multi-ancestry (excluding European)|
7,839 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat-free mass (left) : 0.73548 [0.72554, 0.74541]
PGS R2 (no covariates): 0.03563 [0.02766, 0.0436]
Incremental R2 (full-covars): 0.03443
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018934 PGS003923
(INI23129)
PSS011126|
European Ancestry|
66,571 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat-free mass : 0.77028 [0.76725, 0.77332]
PGS R2 (no covariates): 0.05342 [0.05012, 0.05671]
Incremental R2 (full-covars): 0.05378
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018935 PGS003923
(INI23129)
PSS011106|
European Ancestry|
2,836 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat-free mass : 0.76786 [0.75305, 0.78266]
PGS R2 (no covariates): 0.06983 [0.05194, 0.08772]
Incremental R2 (full-covars): 0.05846
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018936 PGS003923
(INI23129)
PSS011116|
South Asian Ancestry|
1,455 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat-free mass : 0.68418 [0.65769, 0.71067]
PGS R2 (no covariates): 0.02869 [0.012, 0.04537]
Incremental R2 (full-covars): 0.0457
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018937 PGS003923
(INI23129)
PSS011157|
African Ancestry|
1,168 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat-free mass : 0.58996 [0.55462, 0.62531]
PGS R2 (no covariates): 0.00863 [-0.0017, 0.01897]
Incremental R2 (full-covars): 0.00562
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018938 PGS003923
(INI23129)
PSS011163|
Multi-ancestry (excluding European)|
7,838 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat-free mass : 0.75247 [0.74306, 0.76187]
PGS R2 (no covariates): 0.04065 [0.03218, 0.04912]
Incremental R2 (full-covars): 0.04164
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM020491 PGS004376
(X23101.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Whole body fat-free mass PGS R2 (no covariates): 0.21574
PPM020502 PGS004387
(X23113.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Leg fat-free mass (right) PGS R2 (no covariates): 0.2114
PPM020506 PGS004391
(X23117.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Leg fat-free mass (left) PGS R2 (no covariates): 0.21267
PPM020510 PGS004395
(X23121.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Arm fat-free mass (right) PGS R2 (no covariates): 0.19961
PPM020514 PGS004399
(X23125.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Arm fat-free mass (left) PGS R2 (no covariates): 0.20419
PPM020518 PGS004403
(X23129.score)
PSS011364|
European Ancestry|
56,192 individuals
PGP000561 |
Jung H et al. Commun Biol (2024)
Reported Trait: Trunk fat-free mass PGS R2 (no covariates): 0.21407

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS011150 66,614 individuals European
(white British ancestry)
UKB
PSS007887 2,420 individuals African American or Afro-Caribbean Carribean UKB
PSS011135 66,605 individuals European
(white British ancestry)
UKB
PSS011157 1,168 individuals African unspecified UKB
PSS011158 1,169 individuals African unspecified UKB
PSS011162 7,839 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS011163 7,838 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS008545 1,152 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS005046 6,304 individuals African unspecified UKB
PSS009443 19,637 individuals European UK (+ Ireland) UKB
PSS010811 4,062 individuals,
38.0 % Male samples
Mean = 54.3 years
Sd = 7.5 years
European Polish UKB
PSS010559 1,124 individuals,
60.0 % Male samples
Mean = 52.0 years
Sd = 7.9 years
Greater Middle Eastern (Middle Eastern, North African or Persian) Iranian UKB
PSS005047 1,680 individuals East Asian UKB
PSS011176 7,842 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS010307 2,408 individuals,
36.0 % Male samples
Mean = 52.5 years
Sd = 8.1 years
African American or Afro-Caribbean Caribbean UKB
PSS011177 7,841 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS011178 7,840 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS005096 6,305 individuals African unspecified UKB
PSS005097 1,680 individuals East Asian UKB
PSS005098 24,461 individuals European non-white British ancestry UKB
PSS005099 7,649 individuals South Asian UKB
PSS005100 66,257 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005111 6,303 individuals African unspecified UKB
PSS005112 1,679 individuals East Asian UKB
PSS005113 24,461 individuals European non-white British ancestry UKB
PSS005114 7,649 individuals South Asian UKB
PSS005115 66,253 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS009217 4,072 individuals European Poland (NE Europe) UKB
PSS008323 6,185 individuals South Asian India (South Asia) UKB
PSS010727 3,771 individuals,
46.0 % Male samples
Mean = 51.9 years
Sd = 8.1 years
African unspecified Nigerian UKB
PSS010475 6,134 individuals,
54.0 % Male samples
Mean = 53.3 years
Sd = 8.4 years
South Asian Indian UKB
PSS010223 2,318 individuals,
45.0 % Male samples
Mean = 58.0 years
Sd = 7.1 years
European Ashkenazi UKB
PSS008991 3,799 individuals African unspecified Nigeria (West Africa) UKB
PSS011364 56,192 individuals European UKB
PSS011105 2,837 individuals European
(non-white British ancestry)
UKB
PSS011106 2,836 individuals European
(non-white British ancestry)
UKB
PSS008100 1,782 individuals East Asian China (East Asia) UKB
PSS011108 2,835 individuals European
(non-white British ancestry)
UKB
PSS005151 6,299 individuals African unspecified UKB
PSS005152 1,678 individuals East Asian UKB
PSS005153 24,457 individuals European non-white British ancestry UKB
PSS005154 7,647 individuals South Asian UKB
PSS005155 66,234 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS010391 1,770 individuals,
34.0 % Male samples
Mean = 52.4 years
Sd = 7.7 years
East Asian Chinese UKB
PSS011116 1,455 individuals South Asian UKB
PSS011118 1,457 individuals South Asian UKB
PSS011122 66,610 individuals European
(white British ancestry)
UKB
PSS011124 66,607 individuals European
(white British ancestry)
UKB
PSS010895 19,661 individuals,
46.0 % Male samples
Mean = 56.9 years
Sd = 7.9 years
European white British UKB
PSS011126 66,571 individuals European
(white British ancestry)
UKB
PSS010643 6,376 individuals,
45.0 % Male samples
Mean = 54.5 years
Sd = 8.4 years
European Italian UKB
PSS011130 66,591 individuals European
(white British ancestry)
UKB
PSS005171 6,298 individuals African unspecified UKB
PSS005172 1,677 individuals East Asian UKB
PSS005173 24,445 individuals European non-white British ancestry UKB
PSS005174 7,645 individuals South Asian UKB
PSS005175 66,210 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005048 24,463 individuals European non-white British ancestry UKB
PSS005049 7,649 individuals South Asian UKB
PSS005050 66,262 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS008771 6,538 individuals European Italy (South Europe) UKB