Trait: urinary metabolite measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0005116
Description
  • quantification of some metabolite in urine
Trait category
Other measurement
Child trait(s) 2 child traits

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Note: This table shows all PGS for "urinary metabolite measurement" and any child terms of this trait in the EFO hierarchy by default.
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution PGS Scoring File (FTP Link)
PGS000690
(snpnet.Microalbumin_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Microalbumin in urine [mg/L] urinary microalbumin measurement 111
-
http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000690/ScoringFiles/PGS000690.txt.gz - Check Terms/Licenses
PGS000693
(snpnet.Potassium_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Potassium in urine [mmol/L] urinary potassium measurement 2,423
-
http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000693/ScoringFiles/PGS000693.txt.gz - Check Terms/Licenses
PGS000695
(snpnet.Sodium_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Sodium in urine [mmol/L] sodium measurement,
urinary metabolite measurement
5,833
-
http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000695/ScoringFiles/PGS000695.txt.gz - Check Terms/Licenses

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM001418 PGS000690
(snpnet.Microalbumin_in_urine)
PSS000724|
African Ancestry|
2,679 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L] : 0.02307
Spearman's ρ: 0.013
Age, sex, PCs(1-40)
PPM001421 PGS000693
(snpnet.Potassium_in_urine)
PSS000739|
African Ancestry|
5,786 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Potassium in urine [mmol/L] : 0.03001
Spearman's ρ: 0.011
Age, sex, PCs(1-40)
PPM001423 PGS000695
(snpnet.Sodium_in_urine)
PSS000749|
African Ancestry|
5,781 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.0456
Spearman's ρ: 0.029
Age, sex, PCs(1-40)
PPM001453 PGS000690
(snpnet.Microalbumin_in_urine)
PSS000725|
East Asian Ancestry|
323 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L] : 0.00102
Spearman's ρ: 0.098
Age, sex, PCs(1-40)
PPM001456 PGS000693
(snpnet.Potassium_in_urine)
PSS000740|
East Asian Ancestry|
1,045 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Potassium in urine [mmol/L] : 0.01859
Spearman's ρ: 0.038
Age, sex, PCs(1-40)
PPM001458 PGS000695
(snpnet.Sodium_in_urine)
PSS000750|
East Asian Ancestry|
1,044 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.09743
Spearman's ρ: 0.068
Age, sex, PCs(1-40)
PPM001488 PGS000690
(snpnet.Microalbumin_in_urine)
PSS000726|
European Ancestry|
7,133 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L] : 0.02086
Spearman's ρ: 0.023
Age, sex, PCs(1-40)
PPM001491 PGS000693
(snpnet.Potassium_in_urine)
PSS000741|
European Ancestry|
22,839 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Potassium in urine [mmol/L] : 0.04847
Spearman's ρ: 0.036
Age, sex, PCs(1-40)
PPM001493 PGS000695
(snpnet.Sodium_in_urine)
PSS000751|
European Ancestry|
22,812 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.11027
Spearman's ρ: 0.077
Age, sex, PCs(1-40)
PPM001523 PGS000690
(snpnet.Microalbumin_in_urine)
PSS000727|
South Asian Ancestry|
2,560 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L] : 0.02677
Spearman's ρ: 0.053
Age, sex, PCs(1-40)
PPM001528 PGS000695
(snpnet.Sodium_in_urine)
PSS000752|
South Asian Ancestry|
6,993 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.06605
Spearman's ρ: 0.059
Age, sex, PCs(1-40)
PPM001558 PGS000690
(snpnet.Microalbumin_in_urine)
PSS000728|
European Ancestry|
19,352 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L] : 0.02007
Spearman's ρ: 0.021
Age, sex, PCs(1-40)
PPM001563 PGS000695
(snpnet.Sodium_in_urine)
PSS000753|
European Ancestry|
62,011 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.09883
Spearman's ρ: 0.09
Age, sex, PCs(1-40)
PPM001589 PGS000693
(snpnet.Potassium_in_urine)
PSS000835|
European Ancestry|
2,117 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Potassium in urine [mmol/L] Spearman's ρ: 0.065 Age, sex
PPM001594 PGS000690
(snpnet.Microalbumin_in_urine)
PSS000834|
European Ancestry|
1,998 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Microalbumin in urine [mg/L] Spearman's ρ: 0.017 Age, sex
PPM001588 PGS000695
(snpnet.Sodium_in_urine)
PSS000836|
European Ancestry|
2,117 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] Spearman's ρ: 0.059 Age, sex
PPM001526 PGS000693
(snpnet.Potassium_in_urine)
PSS000742|
South Asian Ancestry|
6,998 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Potassium in urine [mmol/L] : 0.06035
Spearman's ρ: 0.027
Age, sex, PCs(1-40)
PPM001561 PGS000693
(snpnet.Potassium_in_urine)
PSS000743|
European Ancestry|
62,013 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Potassium in urine [mmol/L] : 0.04727
Spearman's ρ: 0.042
Age, sex, PCs(1-40)

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000743 62,013 individuals European
(British)
UKB
PSS000835 2,117 individuals European Participants self-identifying as white MESA
PSS000749 5,781 individuals African unspecified UKB
PSS000750 1,044 individuals East Asian UKB
PSS000751 22,812 individuals European Non-British White UKB
PSS000752 6,993 individuals South Asian UKB
PSS000753 62,011 individuals European
(British)
UKB
PSS000836 2,117 individuals European Participants self-identifying as white MESA
PSS000724 2,679 individuals African unspecified UKB
PSS000725 323 individuals East Asian UKB
PSS000726 7,133 individuals European Non-British White UKB
PSS000727 2,560 individuals South Asian UKB
PSS000728 19,352 individuals European
(British)
UKB
PSS000834 1,998 individuals European Participants self-identifying as white MESA
PSS000739 5,786 individuals African unspecified UKB
PSS000740 1,045 individuals East Asian UKB
PSS000741 22,839 individuals European Non-British White UKB
PSS000742 6,998 individuals South Asian UKB