Trait: fat body mass

Experimental Factor Ontology (EFO) Information
Identifier EFO_0005409
Description The weight of the individual's body fat.
Trait category
Other measurement
Synonym total body fat measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001144
(GBE_INI23124)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Arm fat mass (L) fat body mass 23,676
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001144/ScoringFiles/PGS001144.txt.gz
PGS001145
(GBE_INI23120)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Arm fat mass (R) fat body mass 23,528
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001145/ScoringFiles/PGS001145.txt.gz
PGS001146
(GBE_INI23121)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Arm fat-free mass (R) fat body mass 29,063
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001146/ScoringFiles/PGS001146.txt.gz
PGS001147
(GBE_INI23112)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Leg fat mass (R) fat body mass 23,565
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001147/ScoringFiles/PGS001147.txt.gz
PGS001148
(GBE_INI23128)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Trunk fat mass fat body mass 29,233
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001148/ScoringFiles/PGS001148.txt.gz
PGS001149
(GBE_INI23100)
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Whole body fat mass fat body mass 27,550
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001149/ScoringFiles/PGS001149.txt.gz
PGS001951
(portability-PLR_log_fat_mass)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Whole body fat mass fat body mass 107,776
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001951/ScoringFiles/PGS001951.txt.gz
PGS002169
(portability-ldpred2_log_fat_mass)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Whole body fat mass fat body mass 988,292
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002169/ScoringFiles/PGS002169.txt.gz
PGS003532
(cont-decay-log_fat_mass)
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Whole body fat mass fat body mass 979,739
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003532/ScoringFiles/PGS003532.txt.gz
PGS003900
(INI23100)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Whole body fat mass fat body mass 33,555
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003900/ScoringFiles/PGS003900.txt.gz
PGS003910
(INI23112)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Leg fat mass (R) fat body mass 30,780
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003910/ScoringFiles/PGS003910.txt.gz
PGS003913
(INI23116)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Leg fat mass (L) fat body mass 30,794
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003913/ScoringFiles/PGS003913.txt.gz
PGS003916
(INI23120)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Arm fat mass (R) fat body mass 29,790
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003916/ScoringFiles/PGS003916.txt.gz
PGS003919
(INI23124)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Arm fat mass (L) fat body mass 29,392
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003919/ScoringFiles/PGS003919.txt.gz
PGS003922
(INI23128)
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Trunk fat mass fat body mass 34,357
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003922/ScoringFiles/PGS003922.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008447 PGS001144
(GBE_INI23124)
PSS005146|
African Ancestry|
6,301 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (L) : 0.19829 [0.18093, 0.21564]
Incremental R2 (full-covars): 0.01056
PGS R2 (no covariates): 0.0115 [0.00635, 0.01665]
age, sex, UKB array type, Genotype PCs
PPM008448 PGS001144
(GBE_INI23124)
PSS005147|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (L) : 0.10217 [0.07498, 0.12937]
Incremental R2 (full-covars): 0.01559
PGS R2 (no covariates): 0.04382 [0.02485, 0.06278]
age, sex, UKB array type, Genotype PCs
PPM008449 PGS001144
(GBE_INI23124)
PSS005148|
European Ancestry|
24,458 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (L) : 0.11004 [0.10271, 0.11737]
Incremental R2 (full-covars): 0.07159
PGS R2 (no covariates): 0.07386 [0.06761, 0.08012]
age, sex, UKB array type, Genotype PCs
PPM008450 PGS001144
(GBE_INI23124)
PSS005149|
South Asian Ancestry|
7,647 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (L) : 0.16359 [0.14861, 0.17857]
Incremental R2 (full-covars): 0.04415
PGS R2 (no covariates): 0.04982 [0.04043, 0.05921]
age, sex, UKB array type, Genotype PCs
PPM008451 PGS001144
(GBE_INI23124)
PSS005150|
European Ancestry|
66,237 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (L) : 0.1322 [0.12743, 0.13696]
Incremental R2 (full-covars): 0.07627
PGS R2 (no covariates): 0.07725 [0.07338, 0.08112]
age, sex, UKB array type, Genotype PCs
PPM008452 PGS001145
(GBE_INI23120)
PSS005126|
African Ancestry|
6,302 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (R) : 0.20498 [0.18748, 0.22247]
Incremental R2 (full-covars): 0.0099
PGS R2 (no covariates): 0.01125 [0.00615, 0.01635]
age, sex, UKB array type, Genotype PCs
PPM008453 PGS001145
(GBE_INI23120)
PSS005127|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (R) : 0.1096 [0.08166, 0.13753]
Incremental R2 (full-covars): 0.02033
PGS R2 (no covariates): 0.04736 [0.02771, 0.06701]
age, sex, UKB array type, Genotype PCs
PPM008454 PGS001145
(GBE_INI23120)
PSS005128|
European Ancestry|
24,456 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (R) : 0.11299 [0.10558, 0.12039]
Incremental R2 (full-covars): 0.07263
PGS R2 (no covariates): 0.07483 [0.06855, 0.08112]
age, sex, UKB array type, Genotype PCs
PPM008455 PGS001145
(GBE_INI23120)
PSS005129|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (R) : 0.1687 [0.15358, 0.18381]
Incremental R2 (full-covars): 0.04455
PGS R2 (no covariates): 0.04978 [0.04039, 0.05916]
age, sex, UKB array type, Genotype PCs
PPM008456 PGS001145
(GBE_INI23120)
PSS005130|
European Ancestry|
66,249 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat mass (R) : 0.13668 [0.13186, 0.1415]
Incremental R2 (full-covars): 0.07881
PGS R2 (no covariates): 0.07963 [0.07571, 0.08355]
age, sex, UKB array type, Genotype PCs
PPM008459 PGS001146
(GBE_INI23121)
PSS005133|
European Ancestry|
24,458 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (R) : 0.76277 [0.75762, 0.76791]
Incremental R2 (full-covars): 0.03623
PGS R2 (no covariates): 0.03786 [0.03321, 0.04251]
age, sex, UKB array type, Genotype PCs
PPM008457 PGS001146
(GBE_INI23121)
PSS005131|
African Ancestry|
6,302 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (R) : 0.64816 [0.63439, 0.66193]
Incremental R2 (full-covars): 0.00971
PGS R2 (no covariates): 0.01621 [0.01012, 0.02229]
age, sex, UKB array type, Genotype PCs
PPM008458 PGS001146
(GBE_INI23121)
PSS005132|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (R) : 0.75781 [0.73783, 0.77779]
Incremental R2 (full-covars): 0.0021
PGS R2 (no covariates): 0.01403 [0.00296, 0.0251]
age, sex, UKB array type, Genotype PCs
PPM008460 PGS001146
(GBE_INI23121)
PSS005134|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (R) : 0.70823 [0.69735, 0.7191]
Incremental R2 (full-covars): 0.02714
PGS R2 (no covariates): 0.018 [0.01216, 0.02383]
age, sex, UKB array type, Genotype PCs
PPM008461 PGS001146
(GBE_INI23121)
PSS005135|
European Ancestry|
66,249 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Arm fat-free mass (R) : 0.75647 [0.75327, 0.75966]
Incremental R2 (full-covars): 0.0401
PGS R2 (no covariates): 0.04083 [0.03791, 0.04376]
age, sex, UKB array type, Genotype PCs
PPM008462 PGS001147
(GBE_INI23112)
PSS005091|
African Ancestry|
6,305 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat mass (R) : 0.43888 [0.42081, 0.45695]
Incremental R2 (full-covars): 0.00478
PGS R2 (no covariates): 0.00647 [0.00258, 0.01035]
age, sex, UKB array type, Genotype PCs
PPM008463 PGS001147
(GBE_INI23112)
PSS005092|
East Asian Ancestry|
1,680 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat mass (R) : 0.46789 [0.43339, 0.50238]
Incremental R2 (full-covars): -0.00071
PGS R2 (no covariates): 0.03169 [0.01535, 0.04803]
age, sex, UKB array type, Genotype PCs
PPM008464 PGS001147
(GBE_INI23112)
PSS005093|
European Ancestry|
24,463 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat mass (R) : 0.34025 [0.33069, 0.34981]
Incremental R2 (full-covars): 0.05666
PGS R2 (no covariates): 0.05548 [0.04995, 0.061]
age, sex, UKB array type, Genotype PCs
PPM008465 PGS001147
(GBE_INI23112)
PSS005094|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat mass (R) : 0.44907 [0.43273, 0.46542]
Incremental R2 (full-covars): 0.02496
PGS R2 (no covariates): 0.03286 [0.0251, 0.04063]
age, sex, UKB array type, Genotype PCs
PPM008466 PGS001147
(GBE_INI23112)
PSS005095|
European Ancestry|
66,259 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Leg fat mass (R) : 0.37892 [0.37315, 0.38469]
Incremental R2 (full-covars): 0.06155
PGS R2 (no covariates): 0.0616 [0.05808, 0.06511]
age, sex, UKB array type, Genotype PCs
PPM008467 PGS001148
(GBE_INI23128)
PSS005166|
African Ancestry|
6,299 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat mass : 0.07784 [0.06534, 0.09035]
Incremental R2 (full-covars): 0.00763
PGS R2 (no covariates): 0.01681 [0.01061, 0.023]
age, sex, UKB array type, Genotype PCs
PPM008468 PGS001148
(GBE_INI23128)
PSS005167|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat mass : 0.08471 [0.05946, 0.10995]
Incremental R2 (full-covars): 0.02256
PGS R2 (no covariates): 0.04289 [0.0241, 0.06167]
age, sex, UKB array type, Genotype PCs
PPM008469 PGS001148
(GBE_INI23128)
PSS005168|
European Ancestry|
24,450 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat mass : 0.12525 [0.11756, 0.13293]
Incremental R2 (full-covars): 0.09644
PGS R2 (no covariates): 0.10468 [0.09748, 0.11187]
age, sex, UKB array type, Genotype PCs
PPM008470 PGS001148
(GBE_INI23128)
PSS005169|
South Asian Ancestry|
7,646 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat mass : 0.08664 [0.07474, 0.09855]
Incremental R2 (full-covars): 0.06072
PGS R2 (no covariates): 0.06279 [0.05239, 0.07318]
age, sex, UKB array type, Genotype PCs
PPM008471 PGS001148
(GBE_INI23128)
PSS005170|
European Ancestry|
66,220 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Trunk fat mass : 0.11749 [0.11293, 0.12206]
Incremental R2 (full-covars): 0.1078
PGS R2 (no covariates): 0.10871 [0.10428, 0.11315]
age, sex, UKB array type, Genotype PCs
PPM008475 PGS001149
(GBE_INI23100)
PSS005044|
South Asian Ancestry|
7,639 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat mass : 0.17436 [0.1591, 0.18963]
Incremental R2 (full-covars): 0.05377
PGS R2 (no covariates): 0.06028 [0.05006, 0.07049]
age, sex, UKB array type, Genotype PCs
PPM008472 PGS001149
(GBE_INI23100)
PSS005041|
African Ancestry|
6,294 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat mass : 0.22098 [0.20318, 0.23878]
Incremental R2 (full-covars): 0.00715
PGS R2 (no covariates): 0.01342 [0.00786, 0.01897]
age, sex, UKB array type, Genotype PCs
PPM008473 PGS001149
(GBE_INI23100)
PSS005042|
East Asian Ancestry|
1,667 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat mass : 0.10565 [0.0781, 0.1332]
Incremental R2 (full-covars): 0.01419
PGS R2 (no covariates): 0.04325 [0.0244, 0.06211]
age, sex, UKB array type, Genotype PCs
PPM008474 PGS001149
(GBE_INI23100)
PSS005043|
European Ancestry|
24,422 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat mass : 0.1432 [0.13515, 0.15125]
Incremental R2 (full-covars): 0.08949
PGS R2 (no covariates): 0.09358 [0.08669, 0.10047]
age, sex, UKB array type, Genotype PCs
PPM008476 PGS001149
(GBE_INI23100)
PSS005045|
European Ancestry|
66,165 individuals
PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
Reported Trait: Whole body fat mass : 0.16366 [0.15856, 0.16877]
Incremental R2 (full-covars): 0.09847
PGS R2 (no covariates): 0.09893 [0.09465, 0.10321]
age, sex, UKB array type, Genotype PCs
PPM010483 PGS001951
(portability-PLR_log_fat_mass)
PSS009444|
European Ancestry|
19,612 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.3534 [0.3411, 0.3656] sex, age, birth date, deprivation index, 16 PCs
PPM010484 PGS001951
(portability-PLR_log_fat_mass)
PSS009218|
European Ancestry|
4,065 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.3489 [0.3215, 0.3757] sex, age, birth date, deprivation index, 16 PCs
PPM010485 PGS001951
(portability-PLR_log_fat_mass)
PSS008772|
European Ancestry|
6,519 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.3257 [0.3038, 0.3473] sex, age, birth date, deprivation index, 16 PCs
PPM010486 PGS001951
(portability-PLR_log_fat_mass)
PSS008546|
Greater Middle Eastern Ancestry|
1,149 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.2949 [0.2407, 0.3472] sex, age, birth date, deprivation index, 16 PCs
PPM010487 PGS001951
(portability-PLR_log_fat_mass)
PSS008324|
South Asian Ancestry|
6,173 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.292 [0.2689, 0.3146] sex, age, birth date, deprivation index, 16 PCs
PPM010489 PGS001951
(portability-PLR_log_fat_mass)
PSS007888|
African Ancestry|
2,418 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.1615 [0.1223, 0.2002] sex, age, birth date, deprivation index, 16 PCs
PPM010490 PGS001951
(portability-PLR_log_fat_mass)
PSS008992|
African Ancestry|
3,794 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.141 [0.1096, 0.1722] sex, age, birth date, deprivation index, 16 PCs
PPM010488 PGS001951
(portability-PLR_log_fat_mass)
PSS008101|
East Asian Ancestry|
1,766 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.2477 [0.2031, 0.2912] sex, age, birth date, deprivation index, 16 PCs
PPM012199 PGS002169
(portability-ldpred2_log_fat_mass)
PSS009444|
European Ancestry|
19,612 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.3489 [0.3366, 0.3612] sex, age, birth date, deprivation index, 16 PCs
PPM012201 PGS002169
(portability-ldpred2_log_fat_mass)
PSS008772|
European Ancestry|
6,519 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.3303 [0.3085, 0.3518] sex, age, birth date, deprivation index, 16 PCs
PPM012202 PGS002169
(portability-ldpred2_log_fat_mass)
PSS008546|
Greater Middle Eastern Ancestry|
1,149 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.2893 [0.2349, 0.3418] sex, age, birth date, deprivation index, 16 PCs
PPM012203 PGS002169
(portability-ldpred2_log_fat_mass)
PSS008324|
South Asian Ancestry|
6,173 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.2913 [0.2683, 0.314] sex, age, birth date, deprivation index, 16 PCs
PPM012204 PGS002169
(portability-ldpred2_log_fat_mass)
PSS008101|
East Asian Ancestry|
1,766 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.2544 [0.21, 0.2978] sex, age, birth date, deprivation index, 16 PCs
PPM012205 PGS002169
(portability-ldpred2_log_fat_mass)
PSS007888|
African Ancestry|
2,418 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.1745 [0.1355, 0.2131] sex, age, birth date, deprivation index, 16 PCs
PPM012206 PGS002169
(portability-ldpred2_log_fat_mass)
PSS008992|
African Ancestry|
3,794 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.147 [0.1156, 0.1781] sex, age, birth date, deprivation index, 16 PCs
PPM012200 PGS002169
(portability-ldpred2_log_fat_mass)
PSS009218|
European Ancestry|
4,065 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Whole body fat mass Partial Correlation (partial-r): 0.3562 [0.329, 0.3828] sex, age, birth date, deprivation index, 16 PCs
PPM017460 PGS003532
(cont-decay-log_fat_mass)
PSS010896|
European Ancestry|
19,633 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.13 sex, age, deprivation index, PC1-16
PPM017544 PGS003532
(cont-decay-log_fat_mass)
PSS010812|
European Ancestry|
4,055 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.12 sex, age, deprivation index, PC1-16
PPM017628 PGS003532
(cont-decay-log_fat_mass)
PSS010644|
European Ancestry|
6,357 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.11 sex, age, deprivation index, PC1-16
PPM017712 PGS003532
(cont-decay-log_fat_mass)
PSS010560|
Greater Middle Eastern Ancestry|
1,121 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.08 sex, age, deprivation index, PC1-16
PPM017796 PGS003532
(cont-decay-log_fat_mass)
PSS010224|
European Ancestry|
2,313 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.11 sex, age, deprivation index, PC1-16
PPM017880 PGS003532
(cont-decay-log_fat_mass)
PSS010476|
South Asian Ancestry|
6,122 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.09 sex, age, deprivation index, PC1-16
PPM017964 PGS003532
(cont-decay-log_fat_mass)
PSS010392|
East Asian Ancestry|
1,754 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.05 sex, age, deprivation index, PC1-16
PPM018048 PGS003532
(cont-decay-log_fat_mass)
PSS010308|
African Ancestry|
2,406 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.03 sex, age, deprivation index, PC1-16
PPM018132 PGS003532
(cont-decay-log_fat_mass)
PSS010728|
African Ancestry|
3,766 individuals
PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre
Reported Trait: Whole body fat mass partial-R2: 0.02 sex, age, deprivation index, PC1-16
PPM018819 PGS003900
(INI23100)
PSS011125|
European Ancestry|
66,530 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat mass : 0.17244 [0.16727, 0.17762]
PGS R2 (no covariates): 0.1047 [0.10033, 0.10906]
Incremental R2 (full-covars): 0.10407
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018820 PGS003900
(INI23100)
PSS011107|
European Ancestry|
2,833 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat mass : 0.15896 [0.13456, 0.18336]
PGS R2 (no covariates): 0.11465 [0.09283, 0.13646]
Incremental R2 (full-covars): 0.1146
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018821 PGS003900
(INI23100)
PSS011115|
South Asian Ancestry|
1,452 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat mass : 0.21253 [0.17571, 0.24935]
PGS R2 (no covariates): 0.09752 [0.06894, 0.1261]
Incremental R2 (full-covars): 0.07719
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018823 PGS003900
(INI23100)
PSS011164|
Multi-ancestry (excluding European)|
7,824 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat mass : 0.17428 [0.15919, 0.18938]
PGS R2 (no covariates): 0.10059 [0.0881, 0.11308]
Incremental R2 (full-covars): 0.08234
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018822 PGS003900
(INI23100)
PSS011156|
African Ancestry|
1,166 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Whole body fat mass : 0.15685 [0.11937, 0.19432]
PGS R2 (no covariates): 0.01295 [0.00035, 0.02556]
Incremental R2 (full-covars): -0.04775
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018869 PGS003910
(INI23112)
PSS011121|
European Ancestry|
66,612 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (right) : 0.3861 [0.38036, 0.39185]
PGS R2 (no covariates): 0.06466 [0.06108, 0.06824]
Incremental R2 (full-covars): 0.06497
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018870 PGS003910
(INI23112)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (right) : 0.35972 [0.33178, 0.38767]
PGS R2 (no covariates): 0.0599 [0.04316, 0.07665]
Incremental R2 (full-covars): 0.07014
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018871 PGS003910
(INI23112)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (right) : 0.46851 [0.43161, 0.5054]
PGS R2 (no covariates): 0.05268 [0.03063, 0.07474]
Incremental R2 (full-covars): 0.03815
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018872 PGS003910
(INI23112)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (right) : 0.41827 [0.37605, 0.46049]
PGS R2 (no covariates): 0.00758 [-0.00212, 0.01727]
Incremental R2 (full-covars): -0.02564
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018873 PGS003910
(INI23112)
PSS011177|
Multi-ancestry (excluding European)|
7,841 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (right) : 0.37114 [0.35436, 0.38791]
PGS R2 (no covariates): 0.06443 [0.05403, 0.07483]
Incremental R2 (full-covars): 0.04941
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018884 PGS003913
(INI23116)
PSS011123|
European Ancestry|
66,609 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (left) : 0.39741 [0.39168, 0.40313]
PGS R2 (no covariates): 0.06313 [0.05959, 0.06668]
Incremental R2 (full-covars): 0.06377
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018885 PGS003913
(INI23116)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (left) : 0.37246 [0.34459, 0.40033]
PGS R2 (no covariates): 0.05784 [0.04135, 0.07433]
Incremental R2 (full-covars): 0.06889
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018886 PGS003913
(INI23116)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (left) : 0.49254 [0.45642, 0.52866]
PGS R2 (no covariates): 0.05374 [0.0315, 0.07599]
Incremental R2 (full-covars): 0.03687
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018887 PGS003913
(INI23116)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (left) : 0.42831 [0.38632, 0.4703]
PGS R2 (no covariates): 0.00783 [-0.00202, 0.01768]
Incremental R2 (full-covars): -0.02241
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018888 PGS003913
(INI23116)
PSS011177|
Multi-ancestry (excluding European)|
7,841 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Leg fat mass (left) : 0.38211 [0.36539, 0.39884]
PGS R2 (no covariates): 0.06201 [0.05178, 0.07224]
Incremental R2 (full-covars): 0.04801
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018899 PGS003916
(INI23120)
PSS011134|
European Ancestry|
66,604 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (right) : 0.14871 [0.14377, 0.15365]
PGS R2 (no covariates): 0.08625 [0.08221, 0.09029]
Incremental R2 (full-covars): 0.08473
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018901 PGS003916
(INI23120)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (right) : 0.19809 [0.1619, 0.23429]
PGS R2 (no covariates): 0.07372 [0.04821, 0.09922]
Incremental R2 (full-covars): 0.04848
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018902 PGS003916
(INI23120)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (right) : 0.13404 [0.09846, 0.16962]
PGS R2 (no covariates): 0.00846 [-0.00178, 0.01869]
Incremental R2 (full-covars): -0.0561
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018903 PGS003916
(INI23120)
PSS011178|
Multi-ancestry (excluding European)|
7,840 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (right) : 0.14567 [0.13139, 0.15994]
PGS R2 (no covariates): 0.0796 [0.06823, 0.09097]
Incremental R2 (full-covars): 0.06809
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018900 PGS003916
(INI23120)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (right) : 0.12394 [0.1015, 0.14639]
PGS R2 (no covariates): 0.08183 [0.06272, 0.10095]
Incremental R2 (full-covars): 0.083
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018914 PGS003919
(INI23124)
PSS011132|
European Ancestry|
66,594 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (left) : 0.14427 [0.13937, 0.14916]
PGS R2 (no covariates): 0.08369 [0.0797, 0.08768]
Incremental R2 (full-covars): 0.08219
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018915 PGS003919
(INI23124)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (left) : 0.11957 [0.09741, 0.14173]
PGS R2 (no covariates): 0.07793 [0.0592, 0.09667]
Incremental R2 (full-covars): 0.0794
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018916 PGS003919
(INI23124)
PSS011118|
South Asian Ancestry|
1,457 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (left) : 0.18653 [0.1509, 0.22216]
PGS R2 (no covariates): 0.0701 [0.04513, 0.09506]
Incremental R2 (full-covars): 0.04734
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018917 PGS003919
(INI23124)
PSS011158|
African Ancestry|
1,169 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (left) : 0.12442 [0.08976, 0.15909]
PGS R2 (no covariates): 0.00699 [-0.00233, 0.0163]
Incremental R2 (full-covars): -0.05668
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018918 PGS003919
(INI23124)
PSS011162|
Multi-ancestry (excluding European)|
7,839 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Arm fat mass (left) : 0.13999 [0.1259, 0.15408]
PGS R2 (no covariates): 0.07732 [0.06609, 0.08856]
Incremental R2 (full-covars): 0.06589
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018929 PGS003922
(INI23128)
PSS011127|
European Ancestry|
66,580 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat mass : 0.12779 [0.1231, 0.13249]
PGS R2 (no covariates): 0.11593 [0.1114, 0.12047]
Incremental R2 (full-covars): 0.11466
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018930 PGS003922
(INI23128)
PSS011105|
European Ancestry|
2,837 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat mass : 0.13897 [0.11561, 0.16233]
PGS R2 (no covariates): 0.13241 [0.10944, 0.15539]
Incremental R2 (full-covars): 0.12803
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018931 PGS003922
(INI23128)
PSS011119|
South Asian Ancestry|
1,456 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat mass : 0.12834 [0.09667, 0.16001]
PGS R2 (no covariates): 0.11437 [0.08399, 0.14474]
Incremental R2 (full-covars): 0.1067
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018932 PGS003922
(INI23128)
PSS011157|
African Ancestry|
1,168 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat mass : 0.02303 [0.00639, 0.03967]
PGS R2 (no covariates): 0.01601 [0.00204, 0.02998]
Incremental R2 (full-covars): 0.01465
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)
PPM018933 PGS003922
(INI23128)
PSS011163|
Multi-ancestry (excluding European)|
7,838 individuals
PGP000502 |
Tanigawa Y et al. AJHG (2023)
Reported Trait: Trunk fat mass : 0.14605 [0.13176, 0.16034]
PGS R2 (no covariates): 0.1056 [0.09287, 0.11832]
Incremental R2 (full-covars): 0.08711
age, sex, age^2, age*sex, Townsend deprivation index, genotype PCs (PC1-PC18)

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS008772 6,519 individuals European Italy (South Europe) UKB
PSS011132 66,594 individuals European
(white British ancestry)
UKB
PSS010728 3,766 individuals,
46.0 % Male samples
Mean = 51.9 years
Sd = 8.1 years
African unspecified Nigerian UKB
PSS011134 66,604 individuals European
(white British ancestry)
UKB
PSS007888 2,418 individuals African American or Afro-Caribbean Carribean UKB
PSS005043 24,422 individuals European non-white British ancestry UKB
PSS011156 1,166 individuals African unspecified UKB
PSS011157 1,168 individuals African unspecified UKB
PSS011158 1,169 individuals African unspecified UKB
PSS011162 7,839 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS011163 7,838 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS011164 7,824 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS005045 66,165 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS008546 1,149 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS010812 4,055 individuals,
37.0 % Male samples
Mean = 54.3 years
Sd = 7.5 years
European Polish UKB
PSS009444 19,612 individuals European UK (+ Ireland) UKB
PSS010560 1,121 individuals,
60.0 % Male samples
Mean = 52.0 years
Sd = 7.9 years
Greater Middle Eastern (Middle Eastern, North African or Persian) Iranian UKB
PSS011177 7,841 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS010308 2,406 individuals,
36.0 % Male samples
Mean = 52.5 years
Sd = 8.1 years
African American or Afro-Caribbean Caribbean UKB
PSS005091 6,305 individuals African unspecified UKB
PSS005092 1,680 individuals East Asian UKB
PSS005093 24,463 individuals European non-white British ancestry UKB
PSS005094 7,649 individuals South Asian UKB
PSS005095 66,259 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS011178 7,840 individuals East Asian, Other admixed ancestry East Asian, Other admixed ancestry UKB
PSS009218 4,065 individuals European Poland (NE Europe) UKB
PSS008324 6,173 individuals South Asian India (South Asia) UKB
PSS005126 6,302 individuals African unspecified UKB
PSS005127 1,678 individuals East Asian UKB
PSS005128 24,456 individuals European non-white British ancestry UKB
PSS005129 7,649 individuals South Asian UKB
PSS005130 66,249 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005131 6,302 individuals African unspecified UKB
PSS005132 1,678 individuals East Asian UKB
PSS005133 24,458 individuals European non-white British ancestry UKB
PSS005134 7,649 individuals South Asian UKB
PSS005135 66,249 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS010224 2,313 individuals,
45.0 % Male samples
Mean = 58.0 years
Sd = 7.1 years
European Ashkenazi UKB
PSS010476 6,122 individuals,
54.0 % Male samples
Mean = 53.3 years
Sd = 8.4 years
South Asian Indian UKB
PSS008992 3,794 individuals African unspecified Nigeria (West Africa) UKB
PSS011105 2,837 individuals European
(non-white British ancestry)
UKB
PSS005146 6,301 individuals African unspecified UKB
PSS005147 1,678 individuals East Asian UKB
PSS005148 24,458 individuals European non-white British ancestry UKB
PSS005149 7,647 individuals South Asian UKB
PSS005150 66,237 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS008101 1,766 individuals East Asian China (East Asia) UKB
PSS011107 2,833 individuals European
(non-white British ancestry)
UKB
PSS011115 1,452 individuals South Asian UKB
PSS010392 1,754 individuals,
33.0 % Male samples
Mean = 52.4 years
Sd = 7.8 years
East Asian Chinese UKB
PSS011118 1,457 individuals South Asian UKB
PSS011119 1,456 individuals South Asian UKB
PSS011121 66,612 individuals European
(white British ancestry)
UKB
PSS011123 66,609 individuals European
(white British ancestry)
UKB
PSS011125 66,530 individuals European
(white British ancestry)
UKB
PSS005166 6,299 individuals African unspecified UKB
PSS005167 1,678 individuals East Asian UKB
PSS005168 24,450 individuals European non-white British ancestry UKB
PSS005169 7,646 individuals South Asian UKB
PSS005170 66,220 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005041 6,294 individuals African unspecified UKB
PSS005044 7,639 individuals South Asian UKB
PSS005042 1,667 individuals East Asian UKB
PSS010896 19,633 individuals,
46.0 % Male samples
Mean = 56.9 years
Sd = 7.9 years
European white British UKB
PSS010644 6,357 individuals,
45.0 % Male samples
Mean = 54.5 years
Sd = 8.4 years
European Italian UKB
PSS011127 66,580 individuals European
(white British ancestry)
UKB