Trait: body fat percentage

Experimental Factor Ontology (EFO) Information
Identifier EFO_0007800
Description Quantification of the amount of body fat as a percentage of total body mass, calculated as either total mass of fat divided by total body mass or one of a number of more complex weighted equations. Body fat includes essential body fat and storage body fat.
Trait category
Body measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001101
(GBE_INI23099)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Body fat percentage body fat percentage 27,396
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001101/ScoringFiles/PGS001101.txt.gz
PGS001102
(GBE_INI23123)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Body fat percentage (left arm) body fat percentage 25,266
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001102/ScoringFiles/PGS001102.txt.gz
PGS001103
(GBE_INI23115)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Body fat percentage (left leg) body fat percentage 28,134
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001103/ScoringFiles/PGS001103.txt.gz
PGS001104
(GBE_INI23111)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Body fat percentage (right leg) body fat percentage 28,163
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001104/ScoringFiles/PGS001104.txt.gz
PGS001105
(GBE_INI23127)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Body fat percentage (trunk fat) body fat percentage 25,651
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001105/ScoringFiles/PGS001105.txt.gz
PGS001106
(GBE_INI23119)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Percentage of right arm fat body fat percentage 23,943
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001106/ScoringFiles/PGS001106.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008244 PGS001101
(GBE_INI23099)
PSS005036|
African Ancestry|
6,300 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Body fat % : 0.58609 [0.57069, 0.6015]
Incremental R2 (full-covars): -0.00196
PGS R2 (no covariates): 0.00632 [0.00248, 0.01016]
age, sex, UKB array type, Genotype PCs
PPM008245 PGS001101
(GBE_INI23099)
PSS005037|
East Asian Ancestry|
1,677 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Body fat % : 0.43955 [0.40434, 0.47477]
Incremental R2 (full-covars): 0.00787
PGS R2 (no covariates): 0.03564 [0.01839, 0.05289]
age, sex, UKB array type, Genotype PCs
PPM008246 PGS001101
(GBE_INI23099)
PSS005038|
European Ancestry|
24,454 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Body fat % : 0.46731 [0.45827, 0.47636]
Incremental R2 (full-covars): 0.0533
PGS R2 (no covariates): 0.04958 [0.04432, 0.05483]
age, sex, UKB array type, Genotype PCs
PPM008247 PGS001101
(GBE_INI23099)
PSS005039|
South Asian Ancestry|
7,645 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Body fat % : 0.56822 [0.5538, 0.58263]
Incremental R2 (full-covars): 0.01844
PGS R2 (no covariates): 0.0265 [0.01948, 0.03351]
age, sex, UKB array type, Genotype PCs
PPM008248 PGS001101
(GBE_INI23099)
PSS005040|
European Ancestry|
66,227 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Body fat % : 0.51245 [0.50718, 0.51771]
Incremental R2 (full-covars): 0.05409
PGS R2 (no covariates): 0.05282 [0.04954, 0.05611]
age, sex, UKB array type, Genotype PCs
PPM008249 PGS001102
(GBE_INI23123)
PSS005141|
African Ancestry|
6,301 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (L) : 0.60446 [0.58951, 0.61941]
Incremental R2 (full-covars): -3e-05
PGS R2 (no covariates): 0.00397 [0.00092, 0.00702]
age, sex, UKB array type, Genotype PCs
PPM008250 PGS001102
(GBE_INI23123)
PSS005142|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (L) : 0.47666 [0.44242, 0.5109]
Incremental R2 (full-covars): 0.00986
PGS R2 (no covariates): 0.03708 [0.01951, 0.05465]
age, sex, UKB array type, Genotype PCs
PPM008251 PGS001102
(GBE_INI23123)
PSS005143|
European Ancestry|
24,458 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (L) : 0.46034 [0.45125, 0.46943]
Incremental R2 (full-covars): 0.05013
PGS R2 (no covariates): 0.04532 [0.04027, 0.05037]
age, sex, UKB array type, Genotype PCs
PPM008252 PGS001102
(GBE_INI23123)
PSS005144|
South Asian Ancestry|
7,648 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (L) : 0.60959 [0.59609, 0.62308]
Incremental R2 (full-covars): 0.02061
PGS R2 (no covariates): 0.02621 [0.01923, 0.03318]
age, sex, UKB array type, Genotype PCs
PPM008253 PGS001102
(GBE_INI23123)
PSS005145|
European Ancestry|
66,244 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (L) : 0.51263 [0.50736, 0.5179]
Incremental R2 (full-covars): 0.04899
PGS R2 (no covariates): 0.04847 [0.04531, 0.05163]
age, sex, UKB array type, Genotype PCs
PPM008256 PGS001103
(GBE_INI23115)
PSS005108|
European Ancestry|
24,461 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (L) : 0.76237 [0.75721, 0.76752]
Incremental R2 (full-covars): 0.02314
PGS R2 (no covariates): 0.01668 [0.01353, 0.01984]
age, sex, UKB array type, Genotype PCs
PPM008254 PGS001103
(GBE_INI23115)
PSS005106|
African Ancestry|
6,304 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (L) : 0.80234 [0.79373, 0.81095]
Incremental R2 (full-covars): -0.00147
PGS R2 (no covariates): 0.0021 [-0.00012, 0.00432]
age, sex, UKB array type, Genotype PCs
PPM008255 PGS001103
(GBE_INI23115)
PSS005107|
East Asian Ancestry|
1,679 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (L) : 0.8031 [0.78638, 0.81982]
Incremental R2 (full-covars): 2e-05
PGS R2 (no covariates): 0.01698 [0.00484, 0.02912]
age, sex, UKB array type, Genotype PCs
PPM008257 PGS001103
(GBE_INI23115)
PSS005109|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (L) : 0.82056 [0.81337, 0.82776]
Incremental R2 (full-covars): 0.00571
PGS R2 (no covariates): 0.00973 [0.00541, 0.01406]
age, sex, UKB array type, Genotype PCs
PPM008258 PGS001103
(GBE_INI23115)
PSS005110|
European Ancestry|
66,256 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (L) : 0.78472 [0.78184, 0.7876]
Incremental R2 (full-covars): 0.02307
PGS R2 (no covariates): 0.02257 [0.02035, 0.02479]
age, sex, UKB array type, Genotype PCs
PPM008259 PGS001104
(GBE_INI23111)
PSS005086|
African Ancestry|
6,305 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (R) : 0.78127 [0.77187, 0.79066]
Incremental R2 (full-covars): -0.00315
PGS R2 (no covariates): 0.00173 [-0.00029, 0.00375]
age, sex, UKB array type, Genotype PCs
PPM008260 PGS001104
(GBE_INI23111)
PSS005087|
East Asian Ancestry|
1,680 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (R) : 0.78811 [0.77028, 0.80593]
Incremental R2 (full-covars): 0.00106
PGS R2 (no covariates): 0.01989 [0.00679, 0.03299]
age, sex, UKB array type, Genotype PCs
PPM008261 PGS001104
(GBE_INI23111)
PSS005088|
European Ancestry|
24,463 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (R) : 0.74105 [0.73551, 0.74658]
Incremental R2 (full-covars): 0.02472
PGS R2 (no covariates): 0.01874 [0.0154, 0.02207]
age, sex, UKB array type, Genotype PCs
PPM008262 PGS001104
(GBE_INI23111)
PSS005089|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (R) : 0.7979 [0.78991, 0.80589]
Incremental R2 (full-covars): 0.00504
PGS R2 (no covariates): 0.00957 [0.00528, 0.01386]
age, sex, UKB array type, Genotype PCs
PPM008263 PGS001104
(GBE_INI23111)
PSS005090|
European Ancestry|
66,260 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Leg fat % (R) : 0.7638 [0.76069, 0.76692]
Incremental R2 (full-covars): 0.02467
PGS R2 (no covariates): 0.02454 [0.02223, 0.02685]
age, sex, UKB array type, Genotype PCs
PPM008265 PGS001105
(GBE_INI23127)
PSS005162|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Trunk fat % : 0.13249 [0.10257, 0.16242]
Incremental R2 (full-covars): 0.02072
PGS R2 (no covariates): 0.03925 [0.02121, 0.05729]
age, sex, UKB array type, Genotype PCs
PPM008266 PGS001105
(GBE_INI23127)
PSS005163|
European Ancestry|
24,452 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Trunk fat % : 0.23391 [0.22471, 0.24311]
Incremental R2 (full-covars): 0.07149
PGS R2 (no covariates): 0.07404 [0.06778, 0.0803]
age, sex, UKB array type, Genotype PCs
PPM008264 PGS001105
(GBE_INI23127)
PSS005161|
African Ancestry|
6,299 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Trunk fat % : 0.33345 [0.31474, 0.35216]
Incremental R2 (full-covars): -0.0012
PGS R2 (no covariates): 0.01046 [0.00554, 0.01538]
age, sex, UKB array type, Genotype PCs
PPM008267 PGS001105
(GBE_INI23127)
PSS005164|
South Asian Ancestry|
7,646 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Trunk fat % : 0.26434 [0.2476, 0.28109]
Incremental R2 (full-covars): 0.03313
PGS R2 (no covariates): 0.04146 [0.03282, 0.05011]
age, sex, UKB array type, Genotype PCs
PPM008268 PGS001105
(GBE_INI23127)
PSS005165|
European Ancestry|
66,224 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Trunk fat % : 0.26796 [0.26224, 0.27368]
Incremental R2 (full-covars): 0.07557
PGS R2 (no covariates): 0.07501 [0.07118, 0.07883]
age, sex, UKB array type, Genotype PCs
PPM008269 PGS001106
(GBE_INI23119)
PSS005121|
African Ancestry|
6,302 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (R) : 0.61876 [0.60418, 0.63333]
Incremental R2 (full-covars): 0.0012
PGS R2 (no covariates): 0.00365 [0.00072, 0.00657]
age, sex, UKB array type, Genotype PCs
PPM008270 PGS001106
(GBE_INI23119)
PSS005122|
East Asian Ancestry|
1,678 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (R) : 0.46296 [0.42833, 0.49759]
Incremental R2 (full-covars): 0.00917
PGS R2 (no covariates): 0.03415 [0.01724, 0.05107]
age, sex, UKB array type, Genotype PCs
PPM008271 PGS001106
(GBE_INI23119)
PSS005123|
European Ancestry|
24,458 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (R) : 0.45741 [0.4483, 0.46653]
Incremental R2 (full-covars): 0.04769
PGS R2 (no covariates): 0.04324 [0.03829, 0.04818]
age, sex, UKB array type, Genotype PCs
PPM008272 PGS001106
(GBE_INI23119)
PSS005124|
South Asian Ancestry|
7,649 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (R) : 0.62976 [0.61675, 0.64277]
Incremental R2 (full-covars): 0.0194
PGS R2 (no covariates): 0.02347 [0.01685, 0.0301]
age, sex, UKB array type, Genotype PCs
PPM008273 PGS001106
(GBE_INI23119)
PSS005125|
European Ancestry|
66,253 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Arm fat % (R) : 0.5084 [0.50311, 0.51369]
Incremental R2 (full-covars): 0.04751
PGS R2 (no covariates): 0.04648 [0.04338, 0.04959]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS005086 6,305 individuals African unspecified UKB
PSS005087 1,680 individuals East Asian UKB
PSS005088 24,463 individuals European non-white British ancestry UKB
PSS005089 7,649 individuals South Asian UKB
PSS005090 66,260 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005106 6,304 individuals African unspecified UKB
PSS005107 1,679 individuals East Asian UKB
PSS005108 24,461 individuals European non-white British ancestry UKB
PSS005109 7,649 individuals South Asian UKB
PSS005110 66,256 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005121 6,302 individuals African unspecified UKB
PSS005122 1,678 individuals East Asian UKB
PSS005123 24,458 individuals European non-white British ancestry UKB
PSS005124 7,649 individuals South Asian UKB
PSS005125 66,253 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005141 6,301 individuals African unspecified UKB
PSS005142 1,678 individuals East Asian UKB
PSS005143 24,458 individuals European non-white British ancestry UKB
PSS005144 7,648 individuals South Asian UKB
PSS005145 66,244 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005161 6,299 individuals African unspecified UKB
PSS005162 1,678 individuals East Asian UKB
PSS005163 24,452 individuals European non-white British ancestry UKB
PSS005036 6,300 individuals African unspecified UKB
PSS005037 1,677 individuals East Asian UKB
PSS005038 24,454 individuals European non-white British ancestry UKB
PSS005039 7,645 individuals South Asian UKB
PSS005040 66,227 individuals European white British ancestry UKB Testing cohort (heldout set)
PSS005164 7,646 individuals South Asian UKB
PSS005165 66,224 individuals European white British ancestry UKB Testing cohort (heldout set)