Trait: body fat percentage

Experimental Factor Ontology (EFO) Information
Identifier EFO_0007800
Description Quantification of the amount of body fat as a percentage of total body mass, calculated as either total mass of fat divided by total body mass or one of a number of more complex weighted equations. Body fat includes essential body fat and storage body fat.
Trait category
Body measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001101
(GBE_INI23099)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Body fat percentage body fat percentage 27,396
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001101/ScoringFiles/PGS001101.txt.gz
PGS001102
(GBE_INI23123)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Body fat percentage (left arm) body fat percentage 25,266
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001102/ScoringFiles/PGS001102.txt.gz
PGS001103
(GBE_INI23115)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Body fat percentage (left leg) body fat percentage 28,134
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001103/ScoringFiles/PGS001103.txt.gz
PGS001104
(GBE_INI23111)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Body fat percentage (right leg) body fat percentage 28,163
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001104/ScoringFiles/PGS001104.txt.gz
PGS001105
(GBE_INI23127)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Body fat percentage (trunk fat) body fat percentage 25,651
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001105/ScoringFiles/PGS001105.txt.gz
PGS001106
(GBE_INI23119)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Percentage of right arm fat body fat percentage 23,943
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001106/ScoringFiles/PGS001106.txt.gz
PGS001917
(portability-PLR_fat_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Body fat percentage body fat percentage 107,244
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001917/ScoringFiles/PGS001917.txt.gz
PGS002133
(portability-ldpred2_fat_perc)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Body fat percentage body fat percentage 995,419
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002133/ScoringFiles/PGS002133.txt.gz
PGS003509
(cont-decay-fat_perc)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Body fat percentage body fat percentage 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003509/ScoringFiles/PGS003509.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM008244 PGS001101
(GBE_INI23099)
 PSS005036|
African Ancestry|
6,300 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Body fat % — — R²: 0.58609 [0.57069, 0.6015]
Incremental R2 (full-covars): -0.00196
PGS R2 (no covariates): 0.00632 [0.00248, 0.01016]		 age, sex, UKB array type, Genotype PCs —
PPM008245 PGS001101
(GBE_INI23099)
 PSS005037|
East Asian Ancestry|
1,677 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Body fat % — — R²: 0.43955 [0.40434, 0.47477]
Incremental R2 (full-covars): 0.00787
PGS R2 (no covariates): 0.03564 [0.01839, 0.05289]		 age, sex, UKB array type, Genotype PCs —
PPM008246 PGS001101
(GBE_INI23099)
 PSS005038|
European Ancestry|
24,454 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Body fat % — — R²: 0.46731 [0.45827, 0.47636]
Incremental R2 (full-covars): 0.0533
PGS R2 (no covariates): 0.04958 [0.04432, 0.05483]		 age, sex, UKB array type, Genotype PCs —
PPM008247 PGS001101
(GBE_INI23099)
 PSS005039|
South Asian Ancestry|
7,645 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Body fat % — — R²: 0.56822 [0.5538, 0.58263]
Incremental R2 (full-covars): 0.01844
PGS R2 (no covariates): 0.0265 [0.01948, 0.03351]		 age, sex, UKB array type, Genotype PCs —
PPM008248 PGS001101
(GBE_INI23099)
 PSS005040|
European Ancestry|
66,227 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Body fat % — — R²: 0.51245 [0.50718, 0.51771]
Incremental R2 (full-covars): 0.05409
PGS R2 (no covariates): 0.05282 [0.04954, 0.05611]		 age, sex, UKB array type, Genotype PCs —
PPM008253 PGS001102
(GBE_INI23123)
 PSS005145|
European Ancestry|
66,244 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (L) — — R²: 0.51263 [0.50736, 0.5179]
Incremental R2 (full-covars): 0.04899
PGS R2 (no covariates): 0.04847 [0.04531, 0.05163]		 age, sex, UKB array type, Genotype PCs —
PPM008249 PGS001102
(GBE_INI23123)
 PSS005141|
African Ancestry|
6,301 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (L) — — Incremental R2 (full-covars): -3e-05
R²: 0.60446 [0.58951, 0.61941]
PGS R2 (no covariates): 0.00397 [0.00092, 0.00702]		 age, sex, UKB array type, Genotype PCs —
PPM008250 PGS001102
(GBE_INI23123)
 PSS005142|
East Asian Ancestry|
1,678 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (L) — — R²: 0.47666 [0.44242, 0.5109]
Incremental R2 (full-covars): 0.00986
PGS R2 (no covariates): 0.03708 [0.01951, 0.05465]		 age, sex, UKB array type, Genotype PCs —
PPM008251 PGS001102
(GBE_INI23123)
 PSS005143|
European Ancestry|
24,458 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (L) — — R²: 0.46034 [0.45125, 0.46943]
Incremental R2 (full-covars): 0.05013
PGS R2 (no covariates): 0.04532 [0.04027, 0.05037]		 age, sex, UKB array type, Genotype PCs —
PPM008252 PGS001102
(GBE_INI23123)
 PSS005144|
South Asian Ancestry|
7,648 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (L) — — R²: 0.60959 [0.59609, 0.62308]
Incremental R2 (full-covars): 0.02061
PGS R2 (no covariates): 0.02621 [0.01923, 0.03318]		 age, sex, UKB array type, Genotype PCs —
PPM008256 PGS001103
(GBE_INI23115)
 PSS005108|
European Ancestry|
24,461 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (L) — — R²: 0.76237 [0.75721, 0.76752]
Incremental R2 (full-covars): 0.02314
PGS R2 (no covariates): 0.01668 [0.01353, 0.01984]		 age, sex, UKB array type, Genotype PCs —
PPM008254 PGS001103
(GBE_INI23115)
 PSS005106|
African Ancestry|
6,304 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (L) — — R²: 0.80234 [0.79373, 0.81095]
Incremental R2 (full-covars): -0.00147
PGS R2 (no covariates): 0.0021 [-0.00012, 0.00432]		 age, sex, UKB array type, Genotype PCs —
PPM008255 PGS001103
(GBE_INI23115)
 PSS005107|
East Asian Ancestry|
1,679 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (L) — — R²: 0.8031 [0.78638, 0.81982]
Incremental R2 (full-covars): 2e-05
PGS R2 (no covariates): 0.01698 [0.00484, 0.02912]		 age, sex, UKB array type, Genotype PCs —
PPM008257 PGS001103
(GBE_INI23115)
 PSS005109|
South Asian Ancestry|
7,649 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (L) — — R²: 0.82056 [0.81337, 0.82776]
Incremental R2 (full-covars): 0.00571
PGS R2 (no covariates): 0.00973 [0.00541, 0.01406]		 age, sex, UKB array type, Genotype PCs —
PPM008258 PGS001103
(GBE_INI23115)
 PSS005110|
European Ancestry|
66,256 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (L) — — R²: 0.78472 [0.78184, 0.7876]
Incremental R2 (full-covars): 0.02307
PGS R2 (no covariates): 0.02257 [0.02035, 0.02479]		 age, sex, UKB array type, Genotype PCs —
PPM008259 PGS001104
(GBE_INI23111)
 PSS005086|
African Ancestry|
6,305 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (R) — — R²: 0.78127 [0.77187, 0.79066]
Incremental R2 (full-covars): -0.00315
PGS R2 (no covariates): 0.00173 [-0.00029, 0.00375]		 age, sex, UKB array type, Genotype PCs —
PPM008260 PGS001104
(GBE_INI23111)
 PSS005087|
East Asian Ancestry|
1,680 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (R) — — R²: 0.78811 [0.77028, 0.80593]
Incremental R2 (full-covars): 0.00106
PGS R2 (no covariates): 0.01989 [0.00679, 0.03299]		 age, sex, UKB array type, Genotype PCs —
PPM008261 PGS001104
(GBE_INI23111)
 PSS005088|
European Ancestry|
24,463 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (R) — — R²: 0.74105 [0.73551, 0.74658]
Incremental R2 (full-covars): 0.02472
PGS R2 (no covariates): 0.01874 [0.0154, 0.02207]		 age, sex, UKB array type, Genotype PCs —
PPM008262 PGS001104
(GBE_INI23111)
 PSS005089|
South Asian Ancestry|
7,649 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (R) — — R²: 0.7979 [0.78991, 0.80589]
Incremental R2 (full-covars): 0.00504
PGS R2 (no covariates): 0.00957 [0.00528, 0.01386]		 age, sex, UKB array type, Genotype PCs —
PPM008263 PGS001104
(GBE_INI23111)
 PSS005090|
European Ancestry|
66,260 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Leg fat % (R) — — R²: 0.7638 [0.76069, 0.76692]
Incremental R2 (full-covars): 0.02467
PGS R2 (no covariates): 0.02454 [0.02223, 0.02685]		 age, sex, UKB array type, Genotype PCs —
PPM008264 PGS001105
(GBE_INI23127)
 PSS005161|
African Ancestry|
6,299 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Trunk fat % — — R²: 0.33345 [0.31474, 0.35216]
Incremental R2 (full-covars): -0.0012
PGS R2 (no covariates): 0.01046 [0.00554, 0.01538]		 age, sex, UKB array type, Genotype PCs —
PPM008265 PGS001105
(GBE_INI23127)
 PSS005162|
East Asian Ancestry|
1,678 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Trunk fat % — — R²: 0.13249 [0.10257, 0.16242]
Incremental R2 (full-covars): 0.02072
PGS R2 (no covariates): 0.03925 [0.02121, 0.05729]		 age, sex, UKB array type, Genotype PCs —
PPM008266 PGS001105
(GBE_INI23127)
 PSS005163|
European Ancestry|
24,452 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Trunk fat % — — R²: 0.23391 [0.22471, 0.24311]
Incremental R2 (full-covars): 0.07149
PGS R2 (no covariates): 0.07404 [0.06778, 0.0803]		 age, sex, UKB array type, Genotype PCs —
PPM008267 PGS001105
(GBE_INI23127)
 PSS005164|
South Asian Ancestry|
7,646 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Trunk fat % — — R²: 0.26434 [0.2476, 0.28109]
Incremental R2 (full-covars): 0.03313
PGS R2 (no covariates): 0.04146 [0.03282, 0.05011]		 age, sex, UKB array type, Genotype PCs —
PPM008268 PGS001105
(GBE_INI23127)
 PSS005165|
European Ancestry|
66,224 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Trunk fat % — — R²: 0.26796 [0.26224, 0.27368]
Incremental R2 (full-covars): 0.07557
PGS R2 (no covariates): 0.07501 [0.07118, 0.07883]		 age, sex, UKB array type, Genotype PCs —
PPM008269 PGS001106
(GBE_INI23119)
 PSS005121|
African Ancestry|
6,302 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (R) — — R²: 0.61876 [0.60418, 0.63333]
Incremental R2 (full-covars): 0.0012
PGS R2 (no covariates): 0.00365 [0.00072, 0.00657]		 age, sex, UKB array type, Genotype PCs —
PPM008270 PGS001106
(GBE_INI23119)
 PSS005122|
East Asian Ancestry|
1,678 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (R) — — R²: 0.46296 [0.42833, 0.49759]
Incremental R2 (full-covars): 0.00917
PGS R2 (no covariates): 0.03415 [0.01724, 0.05107]		 age, sex, UKB array type, Genotype PCs —
PPM008271 PGS001106
(GBE_INI23119)
 PSS005123|
European Ancestry|
24,458 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (R) — — R²: 0.45741 [0.4483, 0.46653]
Incremental R2 (full-covars): 0.04769
PGS R2 (no covariates): 0.04324 [0.03829, 0.04818]		 age, sex, UKB array type, Genotype PCs —
PPM008272 PGS001106
(GBE_INI23119)
 PSS005124|
South Asian Ancestry|
7,649 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (R) — — R²: 0.62976 [0.61675, 0.64277]
Incremental R2 (full-covars): 0.0194
PGS R2 (no covariates): 0.02347 [0.01685, 0.0301]		 age, sex, UKB array type, Genotype PCs —
PPM008273 PGS001106
(GBE_INI23119)
 PSS005125|
European Ancestry|
66,253 individuals
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Reported Trait: Arm fat % (R) — — R²: 0.5084 [0.50311, 0.51369]
Incremental R2 (full-covars): 0.04751
PGS R2 (no covariates): 0.04648 [0.04338, 0.04959]		 age, sex, UKB array type, Genotype PCs —
PPM010219 PGS001917
(portability-PLR_fat_perc)
 PSS009405|
European Ancestry|
19,632 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.3451 [0.3327, 0.3573] sex, age, birth date, deprivation index, 16 PCs —
PPM010220 PGS001917
(portability-PLR_fat_perc)
 PSS009179|
European Ancestry|
4,073 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.3424 [0.3149, 0.3693] sex, age, birth date, deprivation index, 16 PCs —
PPM010221 PGS001917
(portability-PLR_fat_perc)
 PSS008733|
European Ancestry|
6,533 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.3184 [0.2964, 0.3401] sex, age, birth date, deprivation index, 16 PCs —
PPM010222 PGS001917
(portability-PLR_fat_perc)
 PSS008507|
Greater Middle Eastern Ancestry|
1,151 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.286 [0.2316, 0.3386] sex, age, birth date, deprivation index, 16 PCs —
PPM010223 PGS001917
(portability-PLR_fat_perc)
 PSS008285|
South Asian Ancestry|
6,180 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.2751 [0.2518, 0.298] sex, age, birth date, deprivation index, 16 PCs —
PPM010224 PGS001917
(portability-PLR_fat_perc)
 PSS008062|
East Asian Ancestry|
1,779 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.2312 [0.1865, 0.275] sex, age, birth date, deprivation index, 16 PCs —
PPM010225 PGS001917
(portability-PLR_fat_perc)
 PSS007849|
African Ancestry|
2,418 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.1519 [0.1126, 0.1908] sex, age, birth date, deprivation index, 16 PCs —
PPM010226 PGS001917
(portability-PLR_fat_perc)
 PSS008953|
African Ancestry|
3,799 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.1483 [0.1169, 0.1793] sex, age, birth date, deprivation index, 16 PCs —
PPM011919 PGS002133
(portability-ldpred2_fat_perc)
 PSS009405|
European Ancestry|
19,632 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.3443 [0.3319, 0.3566] sex, age, birth date, deprivation index, 16 PCs —
PPM011920 PGS002133
(portability-ldpred2_fat_perc)
 PSS009179|
European Ancestry|
4,073 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.3456 [0.3182, 0.3724] sex, age, birth date, deprivation index, 16 PCs —
PPM011921 PGS002133
(portability-ldpred2_fat_perc)
 PSS008733|
European Ancestry|
6,533 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.3256 [0.3037, 0.3472] sex, age, birth date, deprivation index, 16 PCs —
PPM011922 PGS002133
(portability-ldpred2_fat_perc)
 PSS008507|
Greater Middle Eastern Ancestry|
1,151 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.2896 [0.2353, 0.3421] sex, age, birth date, deprivation index, 16 PCs —
PPM011923 PGS002133
(portability-ldpred2_fat_perc)
 PSS008285|
South Asian Ancestry|
6,180 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.273 [0.2497, 0.2959] sex, age, birth date, deprivation index, 16 PCs —
PPM011924 PGS002133
(portability-ldpred2_fat_perc)
 PSS008062|
East Asian Ancestry|
1,779 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.2302 [0.1854, 0.274] sex, age, birth date, deprivation index, 16 PCs —
PPM011925 PGS002133
(portability-ldpred2_fat_perc)
 PSS007849|
African Ancestry|
2,418 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.153 [0.1136, 0.1918] sex, age, birth date, deprivation index, 16 PCs —
PPM011926 PGS002133
(portability-ldpred2_fat_perc)
 PSS008953|
African Ancestry|
3,799 individuals
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Reported Trait: Body fat percentage — — Partial Correlation (partial-r): 0.1577 [0.1265, 0.1887] sex, age, birth date, deprivation index, 16 PCs —
PPM017437 PGS003509
(cont-decay-fat_perc)
 PSS010871|
European Ancestry|
19,650 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.12 sex, age, deprivation index, PC1-16 —
PPM017521 PGS003509
(cont-decay-fat_perc)
 PSS010787|
European Ancestry|
4,063 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.11 sex, age, deprivation index, PC1-16 —
PPM017605 PGS003509
(cont-decay-fat_perc)
 PSS010619|
European Ancestry|
6,371 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.1 sex, age, deprivation index, PC1-16 —
PPM017689 PGS003509
(cont-decay-fat_perc)
 PSS010535|
Greater Middle Eastern Ancestry|
1,123 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.08 sex, age, deprivation index, PC1-16 —
PPM017773 PGS003509
(cont-decay-fat_perc)
 PSS010199|
European Ancestry|
2,315 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.11 sex, age, deprivation index, PC1-16 —
PPM017857 PGS003509
(cont-decay-fat_perc)
 PSS010451|
South Asian Ancestry|
6,129 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.07 sex, age, deprivation index, PC1-16 —
PPM018025 PGS003509
(cont-decay-fat_perc)
 PSS010283|
African Ancestry|
2,406 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.03 sex, age, deprivation index, PC1-16 —
PPM018109 PGS003509
(cont-decay-fat_perc)
 PSS010703|
African Ancestry|
3,771 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.02 sex, age, deprivation index, PC1-16 —
PPM017941 PGS003509
(cont-decay-fat_perc)
 PSS010367|
East Asian Ancestry|
1,767 individuals
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Reported Trait: Body fat percentage — — partial-R2: 0.04 sex, age, deprivation index, PC1-16 —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010787 — — 4,063 individuals,
38.0 % Male samples
 Mean = 54.3 years
Sd = 7.5 years		 European Polish UKB —
PSS010535 — — 1,123 individuals,
60.0 % Male samples
 Mean = 52.0 years
Sd = 8.0 years		 Greater Middle Eastern (Middle Eastern, North African or Persian) Iranian UKB —
PSS010283 — — 2,406 individuals,
36.0 % Male samples
 Mean = 52.5 years
Sd = 8.1 years		 African American or Afro-Caribbean Caribbean UKB —
PSS009179 — — 4,073 individuals — European Poland (NE Europe) UKB —
PSS008285 — — 6,180 individuals — South Asian India (South Asia) UKB —
PSS005086 — — 6,305 individuals — African unspecified — UKB —
PSS005087 — — 1,680 individuals — East Asian — UKB —
PSS005088 — — 24,463 individuals — European non-white British ancestry UKB —
PSS005089 — — 7,649 individuals — South Asian — UKB —
PSS005090 — — 66,260 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS010703 — — 3,771 individuals,
46.0 % Male samples
 Mean = 51.9 years
Sd = 8.1 years		 African unspecified Nigerian UKB —
PSS008953 — — 3,799 individuals — African unspecified Nigeria (West Africa) UKB —
PSS005106 — — 6,304 individuals — African unspecified — UKB —
PSS005107 — — 1,679 individuals — East Asian — UKB —
PSS005108 — — 24,461 individuals — European non-white British ancestry UKB —
PSS005109 — — 7,649 individuals — South Asian — UKB —
PSS005110 — — 66,256 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS008062 — — 1,779 individuals — East Asian China (East Asia) UKB —
PSS010199 — — 2,315 individuals,
45.0 % Male samples
 Mean = 58.0 years
Sd = 7.1 years		 European Ashkenazi UKB —
PSS010451 — — 6,129 individuals,
54.0 % Male samples
 Mean = 53.3 years
Sd = 8.4 years		 South Asian Indian UKB —
PSS005121 — — 6,302 individuals — African unspecified — UKB —
PSS005122 — — 1,678 individuals — East Asian — UKB —
PSS005123 — — 24,458 individuals — European non-white British ancestry UKB —
PSS005124 — — 7,649 individuals — South Asian — UKB —
PSS005125 — — 66,253 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS005141 — — 6,301 individuals — African unspecified — UKB —
PSS005142 — — 1,678 individuals — East Asian — UKB —
PSS005143 — — 24,458 individuals — European non-white British ancestry UKB —
PSS005144 — — 7,648 individuals — South Asian — UKB —
PSS005145 — — 66,244 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS008733 — — 6,533 individuals — European Italy (South Europe) UKB —
PSS010871 — — 19,650 individuals,
46.0 % Male samples
 Mean = 56.9 years
Sd = 7.9 years		 European white British UKB —
PSS010619 — — 6,371 individuals,
45.0 % Male samples
 Mean = 54.5 years
Sd = 8.4 years		 European Italian UKB —
PSS010367 — — 1,767 individuals,
33.0 % Male samples
 Mean = 52.4 years
Sd = 7.7 years		 East Asian Chinese UKB —
PSS007849 — — 2,418 individuals — African American or Afro-Caribbean Carribean UKB —
PSS005161 — — 6,299 individuals — African unspecified — UKB —
PSS005162 — — 1,678 individuals — East Asian — UKB —
PSS005163 — — 24,452 individuals — European non-white British ancestry UKB —
PSS005036 — — 6,300 individuals — African unspecified — UKB —
PSS005037 — — 1,677 individuals — East Asian — UKB —
PSS005038 — — 24,454 individuals — European non-white British ancestry UKB —
PSS005039 — — 7,645 individuals — South Asian — UKB —
PSS005040 — — 66,227 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS005164 — — 7,646 individuals — South Asian — UKB —
PSS005165 — — 66,224 individuals — European white British ancestry UKB Testing cohort (heldout set)
PSS008507 — — 1,151 individuals — Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB —
PSS009405 — — 19,632 individuals — European UK (+ Ireland) UKB —