Trait: ventricular rate measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0007928
Description quantification in an electrocardiogram of the number of QRS complexes per minute
Trait category
Cardiovascular measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001981
(portability-PLR_log_ventricular_rate)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Ventricular rate ventricular rate measurement 6,324
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001981/ScoringFiles/PGS001981.txt.gz
PGS002199
(portability-ldpred2_log_ventricular_rate)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Ventricular rate ventricular rate measurement 705,680
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002199/ScoringFiles/PGS002199.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM012444 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS008126|
East Asian Ancestry|
137 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.0478 [-0.1349, 0.2274] sex, age, birth date, deprivation index, 16 PCs
PPM012446 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS009017|
African Ancestry|
140 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): -0.0905 [-0.2655, 0.0902] sex, age, birth date, deprivation index, 16 PCs
PPM012445 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS007913|
African Ancestry|
78 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.0201 [-0.2394, 0.277] sex, age, birth date, deprivation index, 16 PCs
PPM012443 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS008349|
South Asian Ancestry|
307 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.066 [-0.0501, 0.1804] sex, age, birth date, deprivation index, 16 PCs
PPM012442 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS008571|
Greater Middle Eastern Ancestry|
50 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): -0.2917 [-0.59, 0.0766] sex, age, birth date, deprivation index, 16 PCs
PPM012441 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS008797|
European Ancestry|
490 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.1785 [0.0894, 0.2646] sex, age, birth date, deprivation index, 16 PCs
PPM012440 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS009243|
European Ancestry|
329 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.1975 [0.0879, 0.3024] sex, age, birth date, deprivation index, 16 PCs
PPM012439 PGS002199
(portability-ldpred2_log_ventricular_rate)
PSS009469|
European Ancestry|
1,711 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.1563 [0.1094, 0.2024] sex, age, birth date, deprivation index, 16 PCs
PPM010725 PGS001981
(portability-PLR_log_ventricular_rate)
PSS008797|
European Ancestry|
490 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.1205 [0.0304, 0.2087] sex, age, birth date, deprivation index, 16 PCs
PPM010730 PGS001981
(portability-PLR_log_ventricular_rate)
PSS009017|
African Ancestry|
140 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): -0.1197 [-0.2927, 0.0608] sex, age, birth date, deprivation index, 16 PCs
PPM010729 PGS001981
(portability-PLR_log_ventricular_rate)
PSS007913|
African Ancestry|
78 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.0409 [-0.2198, 0.296] sex, age, birth date, deprivation index, 16 PCs
PPM010728 PGS001981
(portability-PLR_log_ventricular_rate)
PSS008126|
East Asian Ancestry|
137 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): -0.0998 [-0.2763, 0.0832] sex, age, birth date, deprivation index, 16 PCs
PPM010727 PGS001981
(portability-PLR_log_ventricular_rate)
PSS008349|
South Asian Ancestry|
307 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.025 [-0.0911, 0.1404] sex, age, birth date, deprivation index, 16 PCs
PPM010726 PGS001981
(portability-PLR_log_ventricular_rate)
PSS008571|
Greater Middle Eastern Ancestry|
50 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): -0.2266 [-0.5425, 0.1456] sex, age, birth date, deprivation index, 16 PCs
PPM010724 PGS001981
(portability-PLR_log_ventricular_rate)
PSS009243|
European Ancestry|
329 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.0953 [-0.0164, 0.2047] sex, age, birth date, deprivation index, 16 PCs
PPM010723 PGS001981
(portability-PLR_log_ventricular_rate)
PSS009469|
European Ancestry|
1,711 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Ventricular rate Partial Correlation (partial-r): 0.1331 [0.086, 0.1796] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007913 78 individuals African American or Afro-Caribbean Carribean UKB
PSS009469 1,711 individuals European UK (+ Ireland) UKB
PSS008797 490 individuals European Italy (South Europe) UKB
PSS009017 140 individuals African unspecified Nigeria (West Africa) UKB
PSS009243 329 individuals European Poland (NE Europe) UKB
PSS008571 50 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS008349 307 individuals South Asian India (South Asia) UKB
PSS008126 137 individuals East Asian China (East Asia) UKB