| Experimental Factor Ontology (EFO) Information | |
| Identifier | EFO_0008328 |
| Description | quantification of some aspect of chronotype such as ease of getting up in the morning | Trait category |
Other measurement
|
| Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | Ancestry distribution | Scoring File (FTP Link) |
|---|---|---|---|---|---|---|
| PGS000336 (GRS313_Chron) |
PGP000103 | Maukonen M et al. J Biol Rhythms (2020) |
Chronotype | chronotype measurement | 313 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000336/ScoringFiles/PGS000336.txt.gz |
| PGS001055 (GBE_QT_FC1001180) |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Chronotype (morning/evening person) | chronotype measurement | 11,428 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001055/ScoringFiles/PGS001055.txt.gz |
| PGS001992 (portability-PLR_more_evening) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Morning/evening person (chronotype) | chronotype measurement | 61,542 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001992/ScoringFiles/PGS001992.txt.gz |
| PGS002209 (portability-ldpred2_more_evening) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Morning/evening person (chronotype) | chronotype measurement | 955,439 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002209/ScoringFiles/PGS002209.txt.gz |
| PGS002318 (other_MORNINGPERSON.BOLT-LMM) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 1,109,311 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002318/ScoringFiles/PGS002318.txt.gz |
| PGS002390 (other_MORNINGPERSON.P+T.0.0001) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 3,625 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002390/ScoringFiles/PGS002390.txt.gz |
| PGS002439 (other_MORNINGPERSON.P+T.0.001) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 16,590 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002439/ScoringFiles/PGS002439.txt.gz |
| PGS002488 (other_MORNINGPERSON.P+T.0.01) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 103,314 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002488/ScoringFiles/PGS002488.txt.gz |
| PGS002537 (other_MORNINGPERSON.P+T.1e-06) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 562 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002537/ScoringFiles/PGS002537.txt.gz |
| PGS002586 (other_MORNINGPERSON.P+T.5e-08) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 255 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002586/ScoringFiles/PGS002586.txt.gz |
| PGS002635 (other_MORNINGPERSON.PolyFun-pred) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 404,978 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002635/ScoringFiles/PGS002635.txt.gz |
| PGS002684 (other_MORNINGPERSON.SBayesR) |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Chronotype (morning person) | chronotype measurement | 977,159 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002684/ScoringFiles/PGS002684.txt.gz |
| PGS003563 (cont-decay-more_evening) |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Morning/evening person (chronotype) | chronotype measurement | 979,739 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003563/ScoringFiles/PGS003563.txt.gz |
|
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
|---|---|---|---|---|---|---|---|---|---|
| PPM000905 | PGS000336 (GRS313_Chron) |
PSS000452| European Ancestry| 7,436 individuals |
PGP000103 | Maukonen M et al. J Biol Rhythms (2020) |
Reported Trait: Later (evening) chronotype | OR: 1.24 [1.18, 1.31] | — | R²: 0.01312 | Age, sex, PCs (1-5), genotyping batch | — |
| PPM000904 | PGS000336 (GRS313_Chron) |
PSS000453| European Ancestry| 7,436 individuals |
PGP000103 | Maukonen M et al. J Biol Rhythms (2020) |
Reported Trait: Later (evening) chronotype | β: -0.49 (0.05) | — | R²: 0.01378 | Age, sex, PCs (1-5), genotyping batch | — |
| PPM000906 | PGS000336 (GRS313_Chron) |
PSS000451| European Ancestry| 8,433 individuals |
PGP000103 | Maukonen M et al. J Biol Rhythms (2020) |
Reported Trait: Later (evening) chronotype | OR: 1.3 [1.24, 1.37] | — | R²: 0.01893 | Age, sex, PCs (1-5), genotyping batch | — |
| PPM008033 | PGS001055 (GBE_QT_FC1001180) |
PSS007526| African Ancestry| 5,462 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | R²: 0.01035 [0.00546, 0.01524] Incremental R2 (full-covars): -2e-05 PGS R2 (no covariates): 0.00256 [0.00011, 0.00502] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008034 | PGS001055 (GBE_QT_FC1001180) |
PSS007527| East Asian Ancestry| 1,493 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | R²: 0.06869 [0.04556, 0.09182] Incremental R2 (full-covars): 0.01362 PGS R2 (no covariates): 0.01779 [0.00537, 0.0302] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008035 | PGS001055 (GBE_QT_FC1001180) |
PSS007528| European Ancestry| 22,724 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | R²: 0.04053 [0.03573, 0.04533] Incremental R2 (full-covars): 0.02842 PGS R2 (no covariates): 0.02756 [0.02355, 0.03157] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008036 | PGS001055 (GBE_QT_FC1001180) |
PSS007529| South Asian Ancestry| 6,662 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | R²: 0.02298 [0.01642, 0.02954] Incremental R2 (full-covars): 0.00656 PGS R2 (no covariates): 0.00831 [0.00431, 0.01232] |
age, sex, UKB array type, Genotype PCs | — |
| PPM008037 | PGS001055 (GBE_QT_FC1001180) |
PSS007530| European Ancestry| 60,873 individuals |
PGP000244 | Tanigawa Y et al. PLoS Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | R²: 0.04074 [0.03781, 0.04366] Incremental R2 (full-covars): 0.03053 PGS R2 (no covariates): 0.03101 [0.02844, 0.03359] |
age, sex, UKB array type, Genotype PCs | — |
| PPM010811 | PGS001992 (portability-PLR_more_evening) |
PSS009475| European Ancestry| 17,895 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2051 [0.191, 0.2191] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010812 | PGS001992 (portability-PLR_more_evening) |
PSS009249| European Ancestry| 3,779 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2007 [0.1699, 0.2312] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010813 | PGS001992 (portability-PLR_more_evening) |
PSS008803| European Ancestry| 5,965 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2002 [0.1757, 0.2245] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010814 | PGS001992 (portability-PLR_more_evening) |
PSS008577| Greater Middle Eastern Ancestry| 982 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1307 [0.0681, 0.1924] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010815 | PGS001992 (portability-PLR_more_evening) |
PSS008355| South Asian Ancestry| 5,368 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1219 [0.0954, 0.1482] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010816 | PGS001992 (portability-PLR_more_evening) |
PSS008132| East Asian Ancestry| 1,598 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1252 [0.0763, 0.1735] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010817 | PGS001992 (portability-PLR_more_evening) |
PSS007919| African Ancestry| 2,172 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.0871 [0.045, 0.1288] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM010818 | PGS001992 (portability-PLR_more_evening) |
PSS009023| African Ancestry| 3,156 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.0562 [0.0212, 0.091] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012519 | PGS002209 (portability-ldpred2_more_evening) |
PSS009475| European Ancestry| 17,895 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2185 [0.2045, 0.2324] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012520 | PGS002209 (portability-ldpred2_more_evening) |
PSS009249| European Ancestry| 3,779 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2126 [0.1819, 0.2429] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012521 | PGS002209 (portability-ldpred2_more_evening) |
PSS008803| European Ancestry| 5,965 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.2127 [0.1883, 0.2369] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012522 | PGS002209 (portability-ldpred2_more_evening) |
PSS008577| Greater Middle Eastern Ancestry| 982 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1562 [0.0939, 0.2172] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012523 | PGS002209 (portability-ldpred2_more_evening) |
PSS008355| South Asian Ancestry| 5,368 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1382 [0.1118, 0.1644] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012524 | PGS002209 (portability-ldpred2_more_evening) |
PSS008132| East Asian Ancestry| 1,598 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.1281 [0.0793, 0.1764] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012526 | PGS002209 (portability-ldpred2_more_evening) |
PSS009023| African Ancestry| 3,156 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.0664 [0.0315, 0.1012] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM012525 | PGS002209 (portability-ldpred2_more_evening) |
PSS007919| African Ancestry| 2,172 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Morning/evening person (chronotype) | — | — | Partial Correlation (partial-r): 0.0826 [0.0405, 0.1245] | sex, age, birth date, deprivation index, 16 PCs | — |
| PPM013132 | PGS002318 (other_MORNINGPERSON.BOLT-LMM) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0109 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013181 | PGS002318 (other_MORNINGPERSON.BOLT-LMM) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.036 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013083 | PGS002318 (other_MORNINGPERSON.BOLT-LMM) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0055 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013230 | PGS002318 (other_MORNINGPERSON.BOLT-LMM) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0146 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013420 | PGS002390 (other_MORNINGPERSON.P+T.0.0001) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0073 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013469 | PGS002390 (other_MORNINGPERSON.P+T.0.0001) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0108 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013518 | PGS002390 (other_MORNINGPERSON.P+T.0.0001) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0048 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013371 | PGS002390 (other_MORNINGPERSON.P+T.0.0001) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0009 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013616 | PGS002439 (other_MORNINGPERSON.P+T.0.001) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0017 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013567 | PGS002439 (other_MORNINGPERSON.P+T.0.001) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0001 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013665 | PGS002439 (other_MORNINGPERSON.P+T.0.001) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.004 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013714 | PGS002439 (other_MORNINGPERSON.P+T.0.001) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0003 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013812 | PGS002488 (other_MORNINGPERSON.P+T.0.01) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0016 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013861 | PGS002488 (other_MORNINGPERSON.P+T.0.01) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0039 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013910 | PGS002488 (other_MORNINGPERSON.P+T.0.01) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0005 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013763 | PGS002488 (other_MORNINGPERSON.P+T.0.01) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014057 | PGS002537 (other_MORNINGPERSON.P+T.1e-06) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0049 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014106 | PGS002537 (other_MORNINGPERSON.P+T.1e-06) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0032 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM013959 | PGS002537 (other_MORNINGPERSON.P+T.1e-06) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0002 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014008 | PGS002537 (other_MORNINGPERSON.P+T.1e-06) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0089 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014155 | PGS002586 (other_MORNINGPERSON.P+T.5e-08) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.001 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014204 | PGS002586 (other_MORNINGPERSON.P+T.5e-08) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0093 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014253 | PGS002586 (other_MORNINGPERSON.P+T.5e-08) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0036 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014302 | PGS002586 (other_MORNINGPERSON.P+T.5e-08) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.003 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014351 | PGS002635 (other_MORNINGPERSON.PolyFun-pred) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0055 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See other_MORNINGPERSON.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM014400 | PGS002635 (other_MORNINGPERSON.PolyFun-pred) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0144 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See other_MORNINGPERSON.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM014449 | PGS002635 (other_MORNINGPERSON.PolyFun-pred) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0373 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See other_MORNINGPERSON.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM014498 | PGS002635 (other_MORNINGPERSON.PolyFun-pred) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model when combined with BOLT-LMM vs. covariates alone): 0.0146 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | See other_MORNINGPERSON.mixweights file at http://data.broadinstitute.org/alkesgroup/polypred_results for combination weights |
| PPM014547 | PGS002684 (other_MORNINGPERSON.SBayesR) |
PSS009715| African Ancestry| 5,524 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0048 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014596 | PGS002684 (other_MORNINGPERSON.SBayesR) |
PSS009716| East Asian Ancestry| 827 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0161 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014645 | PGS002684 (other_MORNINGPERSON.SBayesR) |
PSS009717| European Ancestry| 39,178 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.034 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM014694 | PGS002684 (other_MORNINGPERSON.SBayesR) |
PSS009718| South Asian Ancestry| 6,975 individuals |
PGP000332 | Weissbrod O et al. Nat Genet (2022) |
Reported Trait: Chronotype (morning person) | — | — | Incremental R2 (full model vs. covariates alone): 0.0131 | age, sex, age*sex, assessment center, genotyping array, 10 PCs | — |
| PPM017575 | PGS003563 (cont-decay-more_evening) |
PSS010846| European Ancestry| 3,780 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.04 | sex, age, deprivation index, PC1-16 | — |
| PPM017659 | PGS003563 (cont-decay-more_evening) |
PSS010678| European Ancestry| 5,839 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.05 | sex, age, deprivation index, PC1-16 | — |
| PPM017743 | PGS003563 (cont-decay-more_evening) |
PSS010594| Greater Middle Eastern Ancestry| 982 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.03 | sex, age, deprivation index, PC1-16 | — |
| PPM017827 | PGS003563 (cont-decay-more_evening) |
PSS010258| European Ancestry| 2,039 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.03 | sex, age, deprivation index, PC1-16 | — |
| PPM017911 | PGS003563 (cont-decay-more_evening) |
PSS010510| South Asian Ancestry| 5,368 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.02 | sex, age, deprivation index, PC1-16 | — |
| PPM017995 | PGS003563 (cont-decay-more_evening) |
PSS010426| East Asian Ancestry| 1,600 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.02 | sex, age, deprivation index, PC1-16 | — |
| PPM018163 | PGS003563 (cont-decay-more_evening) |
PSS010762| African Ancestry| 3,156 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.0 | sex, age, deprivation index, PC1-16 | — |
| PPM017491 | PGS003563 (cont-decay-more_evening) |
PSS010930| European Ancestry| 17,864 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.05 | sex, age, deprivation index, PC1-16 | — |
| PPM018079 | PGS003563 (cont-decay-more_evening) |
PSS010342| African Ancestry| 2,172 individuals |
PGP000457 | Ding Y et al. bioRxiv (2022) |Pre |
Reported Trait: Morning/evening person (chronotype) | — | — | partial-R2: 0.01 | sex, age, deprivation index, PC1-16 | — |
|
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
|---|---|---|---|---|---|---|---|---|
| PSS008132 | — | — | 1,598 individuals | — | East Asian | China (East Asia) | UKB | — |
| PSS000451 | Chronotype was assessed using a singl self-evaluatation question from a shortend version of Horne and Ostber'gs MEQ (sMEQ) on chronotype. The sMEQ included 6 items (items 4,7,9,15,17 and 19) from the original MEQ. The answers were scored according to the scoring of the original MEQ. For the single self-evaluation question item 19 was used. The question was used as a binary varable in which those who replied either "rather more an evening than a morning type" or "definitely an evening type" were regarded as evening types, and those who replied "definitely a morning type" or "rather more a morning type than an evening type" were regarrded as morning types. | — | [ ,
47.78 % Male samples |
— | European (Finnish) |
— | FINRISK | Included participants from the National FINRISK 2007 and 2012 studies |
| PSS000452 | Chronotype was assessed using a shortend version of Horne and Ostberg's MEQ(sMEQ) . The sMEQ included 6 items (items 4,7,9,15,17 and 19) from the original MEQ. The answers were scored according to the scoring of the original MEQ. The sum score was used as a binary variable (evening type: socres from 5-15, morning type: socres from 16 to 27; binary sMEQ score). | — | [ ,
46.4 % Male samples |
— | European (Finnish) |
— | FINRISK | Included participants from the National FINRISK 2007 and 2012 studies |
| PSS000453 | Chronotype was assessed using a shortend version of Horne and Ostberg's MEQ(sMEQ) The sMEQ included 6 items (items 4,7,9,15,17 and 19) from the original MEQ. The answers were scored according to the scoring of the original MEQ. The sum score was used as a continuous variable (continuous sMEQ score). | — | 7,436 individuals | — | European (Finnish) |
— | FINRISK | Included participants from the National FINRISK 2007 and 2012 studies |
| PSS010930 | — | — | 17,864 individuals, 45.0 % Male samples |
Mean = 56.8 years Sd = 7.9 years |
European | white British | UKB | — |
| PSS010678 | — | — | 5,839 individuals, 43.0 % Male samples |
Mean = 54.5 years Sd = 8.4 years |
European | Italian | UKB | — |
| PSS010426 | — | — | 1,600 individuals, 33.0 % Male samples |
Mean = 52.4 years Sd = 7.8 years |
East Asian | Chinese | UKB | — |
| PSS008803 | — | — | 5,965 individuals | — | European | Italy (South Europe) | UKB | — |
| PSS007526 | — | — | 5,462 individuals | — | African unspecified | — | UKB | — |
| PSS007527 | — | — | 1,493 individuals | — | East Asian | — | UKB | — |
| PSS007528 | — | — | 22,724 individuals | — | European | non-white British ancestry | UKB | — |
| PSS007529 | — | — | 6,662 individuals | — | South Asian | — | UKB | — |
| PSS007530 | — | — | 60,873 individuals | — | European | white British ancestry | UKB | Testing cohort (heldout set) |
| PSS007919 | — | — | 2,172 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |
| PSS008577 | — | — | 982 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
| PSS009475 | — | — | 17,895 individuals | — | European | UK (+ Ireland) | UKB | — |
| PSS010846 | — | — | 3,780 individuals, 36.0 % Male samples |
Mean = 54.4 years Sd = 7.6 years |
European | Polish | UKB | — |
| PSS010594 | — | — | 982 individuals, 59.0 % Male samples |
Mean = 52.2 years Sd = 8.0 years |
Greater Middle Eastern (Middle Eastern, North African or Persian) | Iranian | UKB | — |
| PSS010342 | — | — | 2,172 individuals, 35.0 % Male samples |
Mean = 52.5 years Sd = 8.1 years |
African American or Afro-Caribbean | Caribbean | UKB | — |
| PSS009249 | — | — | 3,779 individuals | — | European | Poland (NE Europe) | UKB | — |
| PSS008355 | — | — | 5,368 individuals | — | South Asian | India (South Asia) | UKB | — |
| PSS009715 | — | — | 5,524 individuals | — | African unspecified | — | UKB | — |
| PSS009716 | — | — | 827 individuals | — | East Asian | — | UKB | — |
| PSS009717 | — | — | 39,178 individuals | — | European | Non-British European | UKB | — |
| PSS009718 | — | — | 6,975 individuals | — | South Asian | — | UKB | — |
| PSS010762 | — | — | 3,156 individuals, 44.0 % Male samples |
Mean = 51.9 years Sd = 8.1 years |
African unspecified | Nigerian | UKB | — |
| PSS010510 | — | — | 5,368 individuals, 54.0 % Male samples |
Mean = 53.3 years Sd = 8.4 years |
South Asian | Indian | UKB | — |
| PSS010258 | — | — | 2,039 individuals, 43.0 % Male samples |
Mean = 58.1 years Sd = 7.0 years |
European | Ashkenazi | UKB | — |
| PSS009023 | — | — | 3,156 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |