Trait: sodium measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009282
Description
  • A quantitative measurement of the amount of sodium present in a sample.
Trait category
Other measurement
Synonyms 2 synonyms
  • Na measurement
  • sodium levels
Mapped term(s) PMID:29403010

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution PGS Scoring File (FTP Link)
PGS000695
(snpnet.Sodium_in_urine)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Sodium in urine [mmol/L] sodium measurement,
urinary metabolite measurement
5,833
-
http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000695/ScoringFiles/PGS000695.txt.gz - Check Terms/Licenses

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM001423 PGS000695
(snpnet.Sodium_in_urine)
PSS000749|
African Ancestry|
5,781 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.0456
Spearman's ρ: 0.029
Age, sex, PCs(1-40)
PPM001458 PGS000695
(snpnet.Sodium_in_urine)
PSS000750|
East Asian Ancestry|
1,044 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.09743
Spearman's ρ: 0.068
Age, sex, PCs(1-40)
PPM001493 PGS000695
(snpnet.Sodium_in_urine)
PSS000751|
European Ancestry|
22,812 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.11027
Spearman's ρ: 0.077
Age, sex, PCs(1-40)
PPM001528 PGS000695
(snpnet.Sodium_in_urine)
PSS000752|
South Asian Ancestry|
6,993 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.06605
Spearman's ρ: 0.059
Age, sex, PCs(1-40)
PPM001563 PGS000695
(snpnet.Sodium_in_urine)
PSS000753|
European Ancestry|
62,011 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] : 0.09883
Spearman's ρ: 0.09
Age, sex, PCs(1-40)
PPM001588 PGS000695
(snpnet.Sodium_in_urine)
PSS000836|
European Ancestry|
2,117 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Sodium in urine [mmol/L] Spearman's ρ: 0.059 Age, sex

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000749 5,781 individuals African unspecified UKB
PSS000750 1,044 individuals East Asian UKB
PSS000751 22,812 individuals European Non-British White UKB
PSS000752 6,993 individuals South Asian UKB
PSS000753 62,011 individuals European
(British)
UKB
PSS000836 2,117 individuals European Participants self-identifying as white MESA