Experimental Factor Ontology (EFO) Information | |
Identifier | EFO_0009394 |
Description | Volume of hippocampal CA1, which is the part of hippocampus proper bounded by CA2 and the subiculum, characterized by pyramidal neurons that receive projections from pyramidal neurons of CA3 via the Schaffer collaterals. | Trait category |
Other measurement
|
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants | Ancestry distribution | Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS003609 (L_CA1_body_trans_ancestry_meta_analysis) |
PGP000464 | Yu C et al. Research Square (2022) |
Left CA1 body volume | hippocampal CA1 volume | 40,494 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003609/ScoringFiles/PGS003609.txt.gz |
PGS003610 (L_CA1_head_trans_ancestry_meta_analysis) |
PGP000464 | Yu C et al. Research Square (2022) |
Left CA1 head volume | hippocampal CA1 volume | 792 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003610/ScoringFiles/PGS003610.txt.gz |
PGS003611 (R_CA1_body_trans_ancestry_meta_analysis) |
PGP000464 | Yu C et al. Research Square (2022) |
Right CA1 body volume | hippocampal CA1 volume | 7,104 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003611/ScoringFiles/PGS003611.txt.gz |
PGS003612 (R_CA1_head_trans_ancestry_meta_analysis) |
PGP000464 | Yu C et al. Research Square (2022) |
Right CA1 head volume | hippocampal CA1 volume | 6,252 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003612/ScoringFiles/PGS003612.txt.gz |
PGS003613 (L_CA1_body_UKBB_EUR_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Left CA1 body volume | hippocampal CA1 volume | 8 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003613/ScoringFiles/PGS003613.txt.gz |
PGS003614 (L_CA1_head_UKBB_EUR_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Left CA1 head volume | hippocampal CA1 volume | 8,634 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003614/ScoringFiles/PGS003614.txt.gz |
PGS003615 (R_CA1_body_UKBB_EUR_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Right CA1 body volume | hippocampal CA1 volume | 123,648 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003615/ScoringFiles/PGS003615.txt.gz |
PGS003616 (R_CA1_head_UKBB_EUR_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Right CA1 head volume | hippocampal CA1 volume | 19,937 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003616/ScoringFiles/PGS003616.txt.gz |
PGS003617 (L_CA1_body_CHIMGEN_EAS_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Left CA1 body volume | hippocampal CA1 volume | 205 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003617/ScoringFiles/PGS003617.txt.gz |
PGS003618 (L_CA1_head_CHIMGEN_EAS_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Left CA1 head volume | hippocampal CA1 volume | 57 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003618/ScoringFiles/PGS003618.txt.gz |
PGS003619 (R_CA1_body_CHIMGEN_EAS_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Right CA1 body volume | hippocampal CA1 volume | 189 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003619/ScoringFiles/PGS003619.txt.gz |
PGS003620 (R_CA1_head_CHIMGEN_EAS_GWAS) |
PGP000464 | Yu C et al. Research Square (2022) |
Right CA1 head volume | hippocampal CA1 volume | 19,628 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003620/ScoringFiles/PGS003620.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM018289 | PGS003609 (L_CA1_body_trans_ancestry_meta_analysis) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Left CA1 body volume | — | — | R²: 0.01292 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018293 | PGS003610 (L_CA1_head_trans_ancestry_meta_analysis) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Left CA1 head volume | — | — | R²: 0.01741 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018310 | PGS003611 (R_CA1_body_trans_ancestry_meta_analysis) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Right CA1 body volume | — | — | R²: 0.02285 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018314 | PGS003612 (R_CA1_head_trans_ancestry_meta_analysis) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Right CA1 head volume | — | — | R²: 0.01716 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018333 | PGS003613 (L_CA1_body_UKBB_EUR_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Left CA1 body volume | — | — | R²: 0.00563 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018337 | PGS003614 (L_CA1_head_UKBB_EUR_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Left CA1 head volume | — | — | R²: 0.00629 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018354 | PGS003615 (R_CA1_body_UKBB_EUR_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Right CA1 body volume | — | — | R²: 0.00771 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018358 | PGS003616 (R_CA1_head_UKBB_EUR_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Right CA1 head volume | — | — | R²: 0.01234 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018377 | PGS003617 (L_CA1_body_CHIMGEN_EAS_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Left CA1 body volume | — | — | R²: 0.00468 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018381 | PGS003618 (L_CA1_head_CHIMGEN_EAS_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Left CA1 head volume | — | — | R²: 0.00364 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018398 | PGS003619 (R_CA1_body_CHIMGEN_EAS_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Right CA1 body volume | — | — | R²: 0.00624 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PPM018402 | PGS003620 (R_CA1_head_CHIMGEN_EAS_GWAS) |
PSS010958| East Asian Ancestry| 1,999 individuals |
PGP000464 | Yu C et al. Research Square (2022) |
Reported Trait: Right CA1 head volume | — | — | R²: 0.00515 | sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS010958 | — | — | 1,999 individuals | — | East Asian | — | CHIMGEN | — |