Trait: hippocampal amigdala transition area volume

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009401
Description Volume of hippocampal amigdala transition area.
Trait category
Other measurement

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003603
(L_HATA_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left hippocampus-amygdala transition area volume hippocampal amigdala transition area volume 83,449
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003603/ScoringFiles/PGS003603.txt.gz
PGS003604
(R_HATA_trans_ancestry_meta_analysis)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right hippocampus-amygdala transition area volume hippocampal amigdala transition area volume 1,363
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003604/ScoringFiles/PGS003604.txt.gz
PGS003605
(L_HATA_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left hippocampus-amygdala transition area volume hippocampal amigdala transition area volume 30,268
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003605/ScoringFiles/PGS003605.txt.gz
PGS003606
(R_HATA_UKBB_EUR_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right hippocampus-amygdala transition area volume hippocampal amigdala transition area volume 61,932
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003606/ScoringFiles/PGS003606.txt.gz
PGS003607
(L_HATA_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Left hippocampus-amygdala transition area volume hippocampal amigdala transition area volume 67,474
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003607/ScoringFiles/PGS003607.txt.gz
PGS003608
(R_HATA_CHIMGEN_EAS_GWAS)
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Right hippocampus-amygdala transition area volume hippocampal amigdala transition area volume 138,503
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003608/ScoringFiles/PGS003608.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM018305 PGS003603
(L_HATA_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left hippocampus-amygdala transition area volume — — R²: 0.0036 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018326 PGS003604
(R_HATA_trans_ancestry_meta_analysis)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right hippocampus-amygdala transition area volume — — R²: 0.00789 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018349 PGS003605
(L_HATA_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left hippocampus-amygdala transition area volume — — R²: 0.00582 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018370 PGS003606
(R_HATA_UKBB_EUR_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right hippocampus-amygdala transition area volume — — R²: 0.00273 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018393 PGS003607
(L_HATA_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Left hippocampus-amygdala transition area volume — — R²: 0.00383 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —
PPM018414 PGS003608
(R_HATA_CHIMGEN_EAS_GWAS)
 PSS010958|
East Asian Ancestry|
1,999 individuals
 PGP000464 |
Liu N et al. Nat Genet (2023)
 Reported Trait: Right hippocampus-amygdala transition area volume — — R²: 0.00653 sex, age, age2, age × sex, total intracranial volume, and top six genetic principal components —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS010958 — — 1,999 individuals — East Asian — CHIMGEN —