Trait: ease of getting up in the morning, self-reported

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009817
Description Ease of getting up in the morning, as reported by an individual.
Trait category
Other trait

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
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Multi-ancestry (excluding European)
African
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Additional Asian Ancestries
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Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001001
(GBE_QT_FC1001170)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Getting up in morning ease of getting up in the morning, self-reported 7,743
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001001/ScoringFiles/PGS001001.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007768 PGS001001
(GBE_QT_FC1001170)
PSS007521|
African Ancestry|
6,380 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Getting up in morning : 0.02759 [0.01974, 0.03544]
Incremental R2 (full-covars): -0.00068
PGS R2 (no covariates): 0.0016 [-0.00034, 0.00354]
age, sex, UKB array type, Genotype PCs
PPM007769 PGS001001
(GBE_QT_FC1001170)
PSS007522|
East Asian Ancestry|
1,654 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Getting up in morning : 0.05654 [0.03528, 0.0778]
Incremental R2 (full-covars): 0.01249
PGS R2 (no covariates): 0.00998 [0.00061, 0.01936]
age, sex, UKB array type, Genotype PCs
PPM007770 PGS001001
(GBE_QT_FC1001170)
PSS007523|
European Ancestry|
24,834 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Getting up in morning : 0.06844 [0.06239, 0.0745]
Incremental R2 (full-covars): 0.01035
PGS R2 (no covariates): 0.01095 [0.00838, 0.01352]
age, sex, UKB array type, Genotype PCs
PPM007771 PGS001001
(GBE_QT_FC1001170)
PSS007524|
South Asian Ancestry|
7,605 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Getting up in morning : 0.02641 [0.0194, 0.03341]
Incremental R2 (full-covars): -0.00065
PGS R2 (no covariates): 0.00176 [-0.0001, 0.00361]
age, sex, UKB array type, Genotype PCs
PPM007772 PGS001001
(GBE_QT_FC1001170)
PSS007525|
European Ancestry|
67,358 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Getting up in morning : 0.06645 [0.06282, 0.07008]
Incremental R2 (full-covars): 0.01088
PGS R2 (no covariates): 0.0111 [0.00953, 0.01267]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007521 6,380 individuals African unspecified UKB
PSS007522 1,654 individuals East Asian UKB
PSS007523 24,834 individuals European non-white British ancestry UKB
PSS007524 7,605 individuals South Asian UKB
PSS007525 67,358 individuals European white British ancestry UKB Testing cohort (heldout set)