Trait: nap during day, self-reported

Experimental Factor Ontology (EFO) Information
Identifier EFO_0009818
Description Having a nap during the day, as reported by an individual.
Trait category
Other trait
Mapped term NCIt:C118602

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
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Additional Asian Ancestries
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Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001000
(GBE_QT_FC1001190)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Nap during day nap during day, self-reported 10,264
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001000/ScoringFiles/PGS001000.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007763 PGS001000
(GBE_QT_FC1001190)
PSS007531|
African Ancestry|
6,354 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Nap during day : 0.02805 [0.02013, 0.03596]
Incremental R2 (full-covars): -0.0026
PGS R2 (no covariates): 0.0015 [-0.00038, 0.00338]
age, sex, UKB array type, Genotype PCs
PPM007764 PGS001000
(GBE_QT_FC1001190)
PSS007532|
East Asian Ancestry|
1,639 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Nap during day : 0.04314 [0.02431, 0.06197]
Incremental R2 (full-covars): 0.00779
PGS R2 (no covariates): 0.00945 [0.00032, 0.01858]
age, sex, UKB array type, Genotype PCs
PPM007765 PGS001000
(GBE_QT_FC1001190)
PSS007533|
European Ancestry|
24,845 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Nap during day : 0.05039 [0.0451, 0.05569]
Incremental R2 (full-covars): 0.01434
PGS R2 (no covariates): 0.01525 [0.01223, 0.01827]
age, sex, UKB array type, Genotype PCs
PPM007766 PGS001000
(GBE_QT_FC1001190)
PSS007534|
South Asian Ancestry|
7,429 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Nap during day : 0.03321 [0.02541, 0.04101]
Incremental R2 (full-covars): 0.0042
PGS R2 (no covariates): 0.00671 [0.0031, 0.01031]
age, sex, UKB array type, Genotype PCs
PPM007767 PGS001000
(GBE_QT_FC1001190)
PSS007535|
European Ancestry|
67,398 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Nap during day : 0.06089 [0.05739, 0.06439]
Incremental R2 (full-covars): 0.01718
PGS R2 (no covariates): 0.01737 [0.01541, 0.01932]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007531 6,354 individuals African unspecified UKB
PSS007532 1,639 individuals East Asian UKB
PSS007533 24,845 individuals European non-white British ancestry UKB
PSS007534 7,429 individuals South Asian UKB
PSS007535 67,398 individuals European white British ancestry UKB Testing cohort (heldout set)