Trait: lifestyle measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0010724
Description Quantification of some aspect of a subject's lifestyle.
Trait category
Other measurement
Mapped term PMID:32317632

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS000984
(GBE_INI2237)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Frequency of playing computer games lifestyle measurement 5,774
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000984/ScoringFiles/PGS000984.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007698 PGS000984
(GBE_INI2237)
PSS004981|
African Ancestry|
6,346 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Freq. of playing computer games : 0.03251 [0.02403, 0.04099]
Incremental R2 (full-covars): -9e-05
PGS R2 (no covariates): 0.00153 [-0.00037, 0.00342]
age, sex, UKB array type, Genotype PCs
PPM007699 PGS000984
(GBE_INI2237)
PSS004982|
East Asian Ancestry|
1,654 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Freq. of playing computer games : 0.02361 [0.00939, 0.03782]
Incremental R2 (full-covars): 0.0032
PGS R2 (no covariates): 0.00374 [-0.00203, 0.00952]
age, sex, UKB array type, Genotype PCs
PPM007700 PGS000984
(GBE_INI2237)
PSS004983|
European Ancestry|
24,878 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Freq. of playing computer games : 0.01946 [0.01606, 0.02285]
Incremental R2 (full-covars): 0.00925
PGS R2 (no covariates): 0.00972 [0.00729, 0.01214]
age, sex, UKB array type, Genotype PCs
PPM007701 PGS000984
(GBE_INI2237)
PSS004984|
South Asian Ancestry|
7,543 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Freq. of playing computer games : 0.0123 [0.00745, 0.01715]
Incremental R2 (full-covars): -0.00229
PGS R2 (no covariates): 0.00109 [-0.00037, 0.00254]
age, sex, UKB array type, Genotype PCs
PPM007702 PGS000984
(GBE_INI2237)
PSS004985|
European Ancestry|
67,390 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Freq. of playing computer games : 0.01672 [0.0148, 0.01863]
Incremental R2 (full-covars): 0.01068
PGS R2 (no covariates): 0.01089 [0.00933, 0.01245]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS004981 6,346 individuals African unspecified UKB
PSS004982 1,654 individuals East Asian UKB
PSS004983 24,878 individuals European non-white British ancestry UKB
PSS004984 7,543 individuals South Asian UKB
PSS004985 67,390 individuals European white British ancestry UKB Testing cohort (heldout set)