Trait: phosphate measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0010968
Description
  • Quantification of phosphate levels in a sample.
Trait category
Other measurement
Mapped term(s) PMID:33462484

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution PGS Scoring File (FTP Link)
PGS000692
(snpnet.Phosphate)
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Phosphate [mmol/L] phosphate measurement 12,448
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http://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000692/ScoringFiles/PGS000692.txt.gz - Check Terms/Licenses

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM001420 PGS000692
(snpnet.Phosphate)
PSS000734|
African Ancestry|
5,568 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Phosphate [mmol/L] : 0.12827
Spearman's ρ: 0.115
Age, sex, PCs(1-40)
PPM001455 PGS000692
(snpnet.Phosphate)
PSS000735|
East Asian Ancestry|
986 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Phosphate [mmol/L] : 0.20287
Spearman's ρ: 0.222
Age, sex, PCs(1-40)
PPM001490 PGS000692
(snpnet.Phosphate)
PSS000736|
European Ancestry|
21,497 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Phosphate [mmol/L] : 0.22656
Spearman's ρ: 0.253
Age, sex, PCs(1-40)
PPM001525 PGS000692
(snpnet.Phosphate)
PSS000737|
South Asian Ancestry|
6,685 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Phosphate [mmol/L] : 0.20962
Spearman's ρ: 0.226
Age, sex, PCs(1-40)
PPM001560 PGS000692
(snpnet.Phosphate)
PSS000738|
European Ancestry|
58,167 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Phosphate [mmol/L] : 0.23753
Spearman's ρ: 0.255
Age, sex, PCs(1-40)
PPM001587 PGS000692
(snpnet.Phosphate)
PSS000828|
European Ancestry|
2,081 individuals
PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
Reported Trait: Phosphate [mmol/L] Spearman's ρ: 0.248 Age, sex

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000828 2,081 individuals European Participants self-identifying as white MESA
PSS000734 5,568 individuals African unspecified UKB
PSS000735 986 individuals East Asian UKB
PSS000736 21,497 individuals European Non-British White UKB
PSS000737 6,685 individuals South Asian UKB
PSS000738 58,167 individuals European
(British)
UKB