Trait: sitting height measurement

Experimental Factor Ontology (EFO) Information
Identifier EFO_0011011
Description Quantification of some aspect of height, when assuming a sitting position.
Trait category
Other measurement
Mapped term PMID:33623009

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS000969
(GBE_INI20015)
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Sitting height sitting height measurement 36,345
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000969/ScoringFiles/PGS000969.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM007663 PGS000969
(GBE_INI20015)
PSS004886|
African Ancestry|
6,403 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sitting height : 0.3682 [0.34957, 0.38684]
Incremental R2 (full-covars): 0.01039
PGS R2 (no covariates): 0.02603 [0.01839, 0.03367]
age, sex, UKB array type, Genotype PCs
PPM007664 PGS000969
(GBE_INI20015)
PSS004887|
East Asian Ancestry|
1,698 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sitting height : 0.49052 [0.45671, 0.52434]
Incremental R2 (full-covars): 0.04748
PGS R2 (no covariates): 0.07798 [0.05358, 0.10237]
age, sex, UKB array type, Genotype PCs
PPM007665 PGS000969
(GBE_INI20015)
PSS004888|
European Ancestry|
24,825 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sitting height : 0.55998 [0.5518, 0.56815]
Incremental R2 (full-covars): 0.12693
PGS R2 (no covariates): 0.13335 [0.12549, 0.14121]
age, sex, UKB array type, Genotype PCs
PPM007666 PGS000969
(GBE_INI20015)
PSS004889|
South Asian Ancestry|
7,645 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sitting height : 0.52117 [0.50586, 0.53647]
Incremental R2 (full-covars): 0.06153
PGS R2 (no covariates): 0.07384 [0.0627, 0.08499]
age, sex, UKB array type, Genotype PCs
PPM007667 PGS000969
(GBE_INI20015)
PSS004890|
European Ancestry|
67,301 individuals
PGP000244 |
Tanigawa Y et al. medRxiv (2021)
|Pre
Reported Trait: Sitting height : 0.56224 [0.55729, 0.5672]
Incremental R2 (full-covars): 0.12957
PGS R2 (no covariates): 0.1276 [0.1229, 0.1323]
age, sex, UKB array type, Genotype PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS004886 6,403 individuals African unspecified UKB
PSS004887 1,698 individuals East Asian UKB
PSS004888 24,825 individuals European non-white British ancestry UKB
PSS004889 7,645 individuals South Asian UKB
PSS004890 67,301 individuals European white British ancestry UKB Testing cohort (heldout set)