Trait: anal polyp

Trait Information
Identifier MONDO_0060766
Description A non-neoplastic or neoplastic polypoid lesion that arises from the anus. Representative examples include the fibroepithelial polyp and squamous papilloma. [NCIT: C3957]
Trait category
Digestive system disorder
Synonyms 3 synonyms
  • anal polyp
  • polyp of anus
  • polyp of the anus
Mapped terms 3 mapped terms
  • NCIT:C3957
  • SCTID:88580009
  • UMLS:C0267573

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution Scoring File (FTP Link)
PGS001859
(portability-PLR_565.1)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Anal and rectal polyp polyp of rectum,
anal polyp
789
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001859/ScoringFiles/PGS001859.txt.gz
PGS002070
(portability-ldpred2_565.1)
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Anal and rectal polyp polyp of rectum,
anal polyp
584,133
-
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002070/ScoringFiles/PGS002070.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM)
Evaluated Score PGS Sample Set ID
(PSS)
Performance Source Trait PGS Effect Sizes
(per SD change)
Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM011428 PGS002070
(portability-ldpred2_565.1)
PSS008885|
African Ancestry|
3,762 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): -0.0102 [-0.0422, 0.0219] sex, age, birth date, deprivation index, 16 PCs
PPM011427 PGS002070
(portability-ldpred2_565.1)
PSS007781|
African Ancestry|
2,363 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0457 [0.0052, 0.086] sex, age, birth date, deprivation index, 16 PCs
PPM011426 PGS002070
(portability-ldpred2_565.1)
PSS007997|
East Asian Ancestry|
1,770 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0501 [0.0032, 0.0967] sex, age, birth date, deprivation index, 16 PCs
PPM011425 PGS002070
(portability-ldpred2_565.1)
PSS008216|
South Asian Ancestry|
5,990 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0084 [-0.017, 0.0338] sex, age, birth date, deprivation index, 16 PCs
PPM011424 PGS002070
(portability-ldpred2_565.1)
PSS008436|
Greater Middle Eastern Ancestry|
1,135 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0438 [-0.015, 0.1022] sex, age, birth date, deprivation index, 16 PCs
PPM011423 PGS002070
(portability-ldpred2_565.1)
PSS008662|
European Ancestry|
6,382 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0224 [-0.0022, 0.047] sex, age, birth date, deprivation index, 16 PCs
PPM011422 PGS002070
(portability-ldpred2_565.1)
PSS009108|
European Ancestry|
4,008 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0435 [0.0125, 0.0745] sex, age, birth date, deprivation index, 16 PCs
PPM011421 PGS002070
(portability-ldpred2_565.1)
PSS009334|
European Ancestry|
19,196 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0342 [0.02, 0.0483] sex, age, birth date, deprivation index, 16 PCs
PPM009768 PGS001859
(portability-PLR_565.1)
PSS008885|
African Ancestry|
3,762 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0059 [-0.0261, 0.0379] sex, age, birth date, deprivation index, 16 PCs
PPM009767 PGS001859
(portability-PLR_565.1)
PSS007781|
African Ancestry|
2,363 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0309 [-0.0096, 0.0713] sex, age, birth date, deprivation index, 16 PCs
PPM009766 PGS001859
(portability-PLR_565.1)
PSS007997|
East Asian Ancestry|
1,770 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0417 [-0.0051, 0.0884] sex, age, birth date, deprivation index, 16 PCs
PPM009765 PGS001859
(portability-PLR_565.1)
PSS008216|
South Asian Ancestry|
5,990 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): -0.0037 [-0.029, 0.0217] sex, age, birth date, deprivation index, 16 PCs
PPM009764 PGS001859
(portability-PLR_565.1)
PSS008436|
Greater Middle Eastern Ancestry|
1,135 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0633 [0.0047, 0.1216] sex, age, birth date, deprivation index, 16 PCs
PPM009763 PGS001859
(portability-PLR_565.1)
PSS008662|
European Ancestry|
6,382 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0161 [-0.0085, 0.0406] sex, age, birth date, deprivation index, 16 PCs
PPM009762 PGS001859
(portability-PLR_565.1)
PSS009108|
European Ancestry|
4,008 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0361 [0.005, 0.067] sex, age, birth date, deprivation index, 16 PCs
PPM009761 PGS001859
(portability-PLR_565.1)
PSS009334|
European Ancestry|
19,196 individuals
PGP000263 |
Privé F et al. Am J Hum Genet (2022)
Reported Trait: Anal and rectal polyp Partial Correlation (partial-r): 0.0212 [0.007, 0.0353] sex, age, birth date, deprivation index, 16 PCs

Evaluated Samples

PGS Sample Set ID
(PSS)
Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS007781 2,363 individuals African American or Afro-Caribbean Carribean UKB
PSS008436 1,135 individuals Greater Middle Eastern (Middle Eastern, North African or Persian) Iran (Middle East) UKB
PSS008885 3,762 individuals African unspecified Nigeria (West Africa) UKB
PSS008662 6,382 individuals European Italy (South Europe) UKB
PSS009108 4,008 individuals European Poland (NE Europe) UKB
PSS008216 5,990 individuals South Asian India (South Asia) UKB
PSS009334 19,196 individuals European UK (+ Ireland) UKB
PSS007997 1,770 individuals East Asian China (East Asia) UKB