Trait: cardiogenetic rhythm disorder

Trait Information
Identifier MONDO_1010180
Description Any cardiac rhythm disorder with a monogenic etiology that includes, but is not limited to, atrial fibrillation, sick sinus syndrome, progressive cardiac conduction disease, ventricular fibrillation, Brugada syndrome, long QT syndrome, short QT syndrome, tachycardia with fibrillation.
Trait category
Other trait
Synonym cardiogenetic rhythm disorder
Child trait(s) Brugada syndrome

Associated Polygenic Score(s)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
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Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Note: This table shows PGS for child terms of "cardiogenetic rhythm disorder" in the EFO hierarchy.
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000737
(PRS_BrS)
 PGP000144 |
Tadros R et al. Eur Heart J (2019)
 Brugada syndrome Brugada syndrome 3
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000737/ScoringFiles/PGS000737.txt.gz
PGS001779
(BRSprs)
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Brugada syndrome Brugada syndrome 21
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001779/ScoringFiles/PGS001779.txt.gz

Performance Metrics

Disclaimer: The performance metrics are displayed as reported by the source studies. It is important to note that metrics are not necessarily comparable with each other. For example, metrics depend on the sample characteristics (described by the PGS Catalog Sample Set [PSS] ID), phenotyping, and statistical modelling. Please refer to the source publication for additional guidance on performance.

PGS Performance
Metric ID (PPM) 		Evaluated Score PGS Sample Set ID
(PSS) 		Performance Source Trait PGS Effect Sizes
(per SD change) 		Classification Metrics Other Metrics Covariates Included in the Model PGS Performance:
Other Relevant Information
PPM001757 PGS000737
(PRS_BrS)
 PSS000905|
European Ancestry|
1,185 individuals
 PGP000144 |
Tadros R et al. Eur Heart J (2019)
 Reported Trait: Ajmaline-induced Type I Brugada syndrome electrocardiogram OR: 1.174 [1.138, 1.21] — — — —
PPM001758 PGS000737
(PRS_BrS)
 PSS000905|
European Ancestry|
1,185 individuals
 PGP000144 |
Tadros R et al. Eur Heart J (2019)
 Reported Trait: Ajmaline-induced Type I Brugada syndrome electrocardiogram — C-index: 0.68 [0.65, 0.71] correlation coefficient (r): -0.14 — —
PPM009271 PGS001779
(BRSprs)
 PSS007680|
European Ancestry|
359,017 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: Supraventricular tachycardia OR: 0.92 [0.89, 0.96] — p-value: 4e-05 — —
PPM009270 PGS001779
(BRSprs)
 PSS007675|
European Ancestry|
359,017 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: Conduction system disorder orbradyarrhythmia OR: 1.06 [1.03, 1.08] — p-value: 4.63e-06 — —
PPM009272 PGS001779
(BRSprs)
 PSS007676|
European Ancestry|
11,942 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: PQ interval β: 2.69866 — p-value: 1.90e-45 — —
PPM009273 PGS001779
(BRSprs)
 PSS007677|
European Ancestry|
11,566 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: P wave duration β: 0.7576 — p-value: 5.32e-09 — —
PPM009274 PGS001779
(BRSprs)
 PSS007678|
European Ancestry|
11,877 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: QRS complex duration β: 1.23043 — p-value: 4.21e-55 — —
PPM009268 PGS001779
(BRSprs)
 PSS007671|
European Ancestry|
359,017 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: Atrial fibrillation or flutter OR: 0.94 [0.92, 0.95] — p-value: 6.22e-13 — —
PPM009269 PGS001779
(BRSprs)
 PSS007672|
European Ancestry|
359,017 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: Atrioventricular conduction disorder OR: 1.16 [1.1, 1.21] — p-value: 1.47e-09 — —
PPM009275 PGS001779
(BRSprs)
 PSS007679|
European Ancestry|
11,893 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: QT interval β: -1.56242 — p-value: 4.75e-16 — —
PPM009266 PGS001779
(BRSprs)
 PSS007673|
European Ancestry|
2,469 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: SCN5A Mutation in Burgada syndrome cases β: -0.45 — p-value: 2.10e-17 — —
PPM009267 PGS001779
(BRSprs)
 PSS007674|
European Ancestry|
2,820 individuals
 PGP000260 |
Barc J et al. Nat Genet (2022)
 Reported Trait: Brugada baseline or drug-induced type 1 ECG in Burgada syndrome cases β: 0.18 — p-value: 2e-05 — —

Evaluated Samples

PGS Sample Set ID
(PSS) 		Phenotype Definitions and Methods Participant Follow-up Time Sample Numbers Age of Study Participants Sample Ancestry Additional Ancestry Description Cohort(s) Additional Sample/Cohort Information
PSS000905 Intravenous ajmaline was administered at consecutive boluses of 10 mg/min. A 10-s ECG was recorded ∼1 min after each bolus using a GE Healthcare electrocardiograph. The test was stopped when the target dose of 1 mg/kg rounded up to the next 10 mg was reached, if ventricular arrhythmia occurred, or at the manifestation of a Type I BrS pattern, defined as an ST elevation >2 mm with a coved morphology in any lead among V1–V2 in the 2nd to 4th intercostal spaces.15 — 1,185 individuals — European — Amsterdam —
PSS007671 An atrial tachyarrhythmia characterised by rapid (usually faster than 300 bpm), irregular and uncoordinated atrial impulse generation, usually manifesting on ECG with indistinct P-waves and an irregularly irregular ventricular response. —
[
  • 13,763 cases
  • , 345,254 controls
]
 — European British UKB —
PSS007672 Disorder of the atrioventricular conduction system in which there is failure of all atrial impulses to propagate to the ventricle —
[
  • 1,716 cases
  • , 357,301 controls
]
 — European British UKB —
PSS007673 Pathogenicity of rare variants in SCN5A identified in included BrS cases was centrally assessed using the American College of Medical Genetics and Genomics and Association of Molecular Pathology (ACMG/AMP) guidelines, using an adapted version of CardioClassifier incorporating a quantitative approach based on case-control analyses, as performed previously in hypertrophic cardiomyopathy genes, as well as a curated compendium of functional data. —
[
  • 454 cases
  • , 2,015 controls
]
 — European Dutch, Belgian, German, British, Turkish, Italian, Spanish, Danish, French, Irish NR These samples overlap with the cases used in the score development
PSS007674 A type 1 Brugada Syndrome ECG was defined as a coved type ST elevation at baseline (spontaneous) or after a drug challenge test, in one or more leads in the right precordial leads V1 and/or V2 in the standard position (4th intercostal space) or in high positions (2nd or 3rd intercostal spaces). —
[
  • 993 cases
  • , 1,827 controls
]
 — European Dutch, Belgian, German, British, Turkish, Italian, Spanish, Danish, French, Irish NR These samples overlap with the cases used in the score development
PSS007675 Disorder of the atrioventricular conduction system in which there is failure of all atrial impulses to propagate to the ventricle or Any of a number of possible arrhythmias originating from at or above the level of bundle of His in which the heart beats slower than the age-dependent lower limits of normal. —
[
  • 6,711 cases
  • , 352,306 controls
]
 — European British UKB —
PSS007676 Electrocardiogram PQ interval — 11,942 individuals — European British UKB —
PSS007677 Electrocardiogram P-wave duration — 11,566 individuals — European British UKB —
PSS007678 Electrocardiogram QRS duration — 11,877 individuals — European British UKB —
PSS007679 Electrocardiogram QT interval — 11,893 individuals — European British UKB —
PSS007680 associated with episodes of atrial tachycardia —
[
  • 2,645 cases
  • , 356,372 controls
]
 — European British UKB —