Trait Information | |
Identifier | Orphanet_309816 | Trait category |
Metabolic disorder
|
Synonyms |
5 synonyms
|
Mapped term | OMIM:614335 |
Polygenic Score ID & Name | PGS Publication ID (PGP) | Reported Trait | Mapped Trait(s) (Ontology) | Number of Variants |
Ancestry distribution GWAS Dev Eval |
Scoring File (FTP Link) |
---|---|---|---|---|---|---|
PGS001824 (portability-PLR_277.4) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Disorders of bilirubin excretion | Disorder of bilirubin metabolism and excretion | 22 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001824/ScoringFiles/PGS001824.txt.gz |
PGS002032 (portability-ldpred2_277.4) |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Disorders of bilirubin excretion | Disorder of bilirubin metabolism and excretion | 19,768 | - |
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002032/ScoringFiles/PGS002032.txt.gz |
PGS Performance Metric ID (PPM) |
Evaluated Score |
PGS Sample Set ID (PSS) |
Performance Source | Trait |
PGS Effect Sizes (per SD change) |
Classification Metrics | Other Metrics | Covariates Included in the Model |
PGS Performance: Other Relevant Information |
---|---|---|---|---|---|---|---|---|---|
PPM009490 | PGS001824 (portability-PLR_277.4) |
PSS009294| European Ancestry| 19,924 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0716 [0.0577, 0.0854] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009491 | PGS001824 (portability-PLR_277.4) |
PSS009068| European Ancestry| 4,126 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0565 [0.026, 0.087] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009492 | PGS001824 (portability-PLR_277.4) |
PSS008622| European Ancestry| 6,636 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0696 [0.0455, 0.0935] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009493 | PGS001824 (portability-PLR_277.4) |
PSS008397| Greater Middle Eastern Ancestry| 1,196 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): -0.0314 [-0.0885, 0.0258] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009494 | PGS001824 (portability-PLR_277.4) |
PSS008176| South Asian Ancestry| 6,292 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0243 | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009495 | PGS001824 (portability-PLR_277.4) |
PSS007743| African Ancestry| 2,472 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.002 [-0.0376, 0.0416] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM009496 | PGS001824 (portability-PLR_277.4) |
PSS008847| African Ancestry| 3,901 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0014 [-0.0301, 0.0328] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011128 | PGS002032 (portability-ldpred2_277.4) |
PSS009294| European Ancestry| 19,924 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0716 [0.0578, 0.0854] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011129 | PGS002032 (portability-ldpred2_277.4) |
PSS009068| European Ancestry| 4,126 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0534 [0.0228, 0.0838] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011130 | PGS002032 (portability-ldpred2_277.4) |
PSS008622| European Ancestry| 6,636 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0714 [0.0474, 0.0953] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011131 | PGS002032 (portability-ldpred2_277.4) |
PSS008397| Greater Middle Eastern Ancestry| 1,196 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): -0.0333 [-0.0903, 0.0239] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011132 | PGS002032 (portability-ldpred2_277.4) |
PSS008176| South Asian Ancestry| 6,292 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0252 | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011133 | PGS002032 (portability-ldpred2_277.4) |
PSS007743| African Ancestry| 2,472 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): 0.0011 [-0.0385, 0.0406] | sex, age, birth date, deprivation index, 16 PCs | — |
PPM011134 | PGS002032 (portability-ldpred2_277.4) |
PSS008847| African Ancestry| 3,901 individuals |
PGP000263 | Privé F et al. Am J Hum Genet (2022) |
Reported Trait: Disorders of bilirubin excretion | — | — | Partial Correlation (partial-r): -0.0017 [-0.0332, 0.0297] | sex, age, birth date, deprivation index, 16 PCs | — |
PGS Sample Set ID (PSS) |
Phenotype Definitions and Methods | Participant Follow-up Time | Sample Numbers | Age of Study Participants | Sample Ancestry | Additional Ancestry Description | Cohort(s) | Additional Sample/Cohort Information |
---|---|---|---|---|---|---|---|---|
PSS009068 | — | — | 4,126 individuals | — | European | Poland (NE Europe) | UKB | — |
PSS008397 | — | — | 1,196 individuals | — | Greater Middle Eastern (Middle Eastern, North African or Persian) | Iran (Middle East) | UKB | — |
PSS008622 | — | — | 6,636 individuals | — | European | Italy (South Europe) | UKB | — |
PSS009294 | — | — | 19,924 individuals | — | European | UK (+ Ireland) | UKB | — |
PSS008176 | — | — | 6,292 individuals | — | South Asian | India (South Asia) | UKB | — |
PSS008847 | — | — | 3,901 individuals | — | African unspecified | Nigeria (West Africa) | UKB | — |
PSS007743 | — | — | 2,472 individuals | — | African American or Afro-Caribbean | Carribean | UKB | — |