Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS004964
(Hemoglobin_Mean_INT_prscs_HISss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,273,252
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004964/ScoringFiles/PGS004964.txt.gz
PGS004965
(Hemoglobin_Mean_INT_prscs_METAss_afrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,273,252
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004965/ScoringFiles/PGS004965.txt.gz
PGS004966
(Hemoglobin_Mean_INT_prscs_METAss_amrld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,273,252
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004966/ScoringFiles/PGS004966.txt.gz
PGS004967
(Hemoglobin_Mean_INT_prscs_METAss_eurld)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Hemoglobin hemoglobin measurement 1,273,252
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004967/ScoringFiles/PGS004967.txt.gz
PGS004834
(skin_cancer_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Skin cancer melanoma 1,271,902
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004834/ScoringFiles/PGS004834.txt.gz
PGS003964
(DBP_weightedPRSsum)
 PGP000510 |
Kurniansyah N et al. Nat Commun (2023)
 Diastolic blood pressure diastolic blood pressure 1,267,600
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003964/ScoringFiles/PGS003964.txt.gz
PGS003968
(SBP_weightedPRSsum)
 PGP000510 |
Kurniansyah N et al. Nat Commun (2023)
 Systolic blood pressure systolic blood pressure 1,267,240
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003968/ScoringFiles/PGS003968.txt.gz
PGS002308
(PRScsx_T2D)
 PGP000331 |
Ge T et al. Genome Med (2022)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,259,754
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002308/ScoringFiles/PGS002308.txt.gz
PGS004772
(hct_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hematocrit hematocrit 1,259,662
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004772/ScoringFiles/PGS004772.txt.gz
PGS004774
(hct_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hematocrit hematocrit 1,259,662
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004774/ScoringFiles/PGS004774.txt.gz
PGS005085
(Phe_428_1_prscsx_METAweight)
 PGP000679 |
Gunn S et al. HGG Adv (2024)
 Congestive heart failure (CHF), NOS (PheCode 428.1) congestive heart failure 1,256,161
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005085/ScoringFiles/PGS005085.txt.gz
PGS002805
(GIANT_HEIGHT_YENGO_2022_PGS_WEIGHTS_HIS)
 PGP000382 |
Yengo L et al. Nature (2022)
 Height body height 1,245,514
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002805/ScoringFiles/PGS002805.txt.gz
PGS000888
(GLGC_2021_ALL_LDL_PRS_weights_PRS-CS)
 PGP000230 |
Graham SE et al. Nature (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,239,184
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000888/ScoringFiles/PGS000888.txt.gz
PGS002781
(GLGC_2021_ALL_HDL_PRS_weights_PRS-CS)
 PGP000366 |
Kanoni S et al. Genome Biol (2022)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,239,184
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002781/ScoringFiles/PGS002781.txt.gz
PGS002782
(GLGC_2021_ALL_nonHDL_PRS_weights_PRS-CS)
 PGP000366 |
Kanoni S et al. Genome Biol (2022)
 nonHDL Cholesterol non-high density lipoprotein cholesterol measurement 1,239,184
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002782/ScoringFiles/PGS002782.txt.gz
PGS001801
(PRS_Ratio)
 PGP000264 |
Moll M et al. Lancet Respir Med (2020)
 FEV1/FVC ratio FEV/FVC ratio 1,232,916
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001801/ScoringFiles/PGS001801.txt.gz
PGS000886
(GLGC_2021_AFR_LDL_PRS_weights_PRS-CS)
 PGP000230 |
Graham SE et al. Nature (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,222,318
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000886/ScoringFiles/PGS000886.txt.gz
PGS003961
(DBP_AFR)
 PGP000510 |
Kurniansyah N et al. Nat Commun (2023)
 Diastolic blood pressure diastolic blood pressure 1,221,464
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003961/ScoringFiles/PGS003961.txt.gz
PGS003965
(SBP_AFR)
 PGP000510 |
Kurniansyah N et al. Nat Commun (2023)
 Systolic blood pressure systolic blood pressure 1,221,464
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003965/ScoringFiles/PGS003965.txt.gz
PGS002724
(GIGASTROKE_iPGS_EUR)
 PGP000333 |
Mishra A et al. Nature (2022)
 Ischemic stroke stroke,
Ischemic stroke		 1,213,574
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002724/ScoringFiles/PGS002724.txt.gz
PGS002932
(ExPRSweb_FPG_MAGIC-FastingGlucose_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Fasting plasma glucose blood glucose amount 1,202,298
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002932/ScoringFiles/PGS002932.txt.gz
PGS004721
(AST_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Aspartate aminotransferase level aspartate aminotransferase measurement 1,196,185
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004721/ScoringFiles/PGS004721.txt.gz
PGS003365
(GSCAN_CigDay_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Cigarettes smoked per day cigarettes per day measurement 1,196,168
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003365/ScoringFiles/PGS003365.txt.gz
PGS003357
(GSCAN_SmkInit_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking initiation smoking initiation 1,194,472
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003357/ScoringFiles/PGS003357.txt.gz
PGS004643
(LDL_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,194,231
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004643/ScoringFiles/PGS004643.txt.gz
PGS004829
(sbp_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Systolic blood pressure systolic blood pressure 1,194,211
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004829/ScoringFiles/PGS004829.txt.gz
PGS003369
(GSCAN_SmkCes_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Smoking cessation smoking cessation 1,193,789
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003369/ScoringFiles/PGS003369.txt.gz
PGS003361
(GSCAN_AgeSmk_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Age of smoking initiation age at initiation of smoking 1,193,754
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003361/ScoringFiles/PGS003361.txt.gz
PGS004658
(logTG_EAS_ldpred2)
 PGP000595 |
Zhang J et al. Nat Commun (2024)
 Log triglycerides triglyceride measurement 1,192,539
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004658/ScoringFiles/PGS004658.txt.gz
PGS003792
(LDL_EAS_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,191,112
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003792/ScoringFiles/PGS003792.txt.gz
PGS003793
(LDL_EAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,191,112
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003793/ScoringFiles/PGS003793.txt.gz
PGS003809
(logTG_EAS_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,189,464
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003809/ScoringFiles/PGS003809.txt.gz
PGS003810
(logTG_EAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,189,464
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003810/ScoringFiles/PGS003810.txt.gz
PGS003851
(CRC_PRS_EUR)
 PGP000294 |
Thomas M et al. Am J Hum Genet (2020)
 Colorectal cancer colorectal cancer 1,180,765
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003851/ScoringFiles/PGS003851.txt.gz
PGS004741
(BUN_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Urea urea measurement 1,178,386
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004741/ScoringFiles/PGS004741.txt.gz
PGS003373
(GSCAN_DrnkWk_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Drinks per week alcohol consumption quality 1,177,071
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003373/ScoringFiles/PGS003373.txt.gz
PGS004773
(Hct_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hematocrit hematocrit 1,176,938
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004773/ScoringFiles/PGS004773.txt.gz
PGS000894
(GLGC_2021_HIS_LDL_PRS_weights_PRS-CS)
 PGP000230 |
Graham SE et al. Nature (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,175,595
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000894/ScoringFiles/PGS000894.txt.gz
PGS004755
(dbp_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Diastolic blood pressure diastolic blood pressure 1,172,953
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004755/ScoringFiles/PGS004755.txt.gz
PGS004785
(HTN_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hypertension hypertension 1,170,615
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004785/ScoringFiles/PGS004785.txt.gz
PGS004855
(WBC_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 White blood cell count leukocyte quantity 1,165,158
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004855/ScoringFiles/PGS004855.txt.gz
PGS004821
(RBC_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red blood cell count erythrocyte count 1,160,061
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004821/ScoringFiles/PGS004821.txt.gz
PGS002800
(GIANT_HEIGHT_YENGO_2022_PGS_WEIGHTS_SAS)
 PGP000382 |
Yengo L et al. Nature (2022)
 Height body height 1,156,741
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002800/ScoringFiles/PGS002800.txt.gz
PGS003772
(HDL_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,155,488
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003772/ScoringFiles/PGS003772.txt.gz
PGS003777
(HDL_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,155,488
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003777/ScoringFiles/PGS003777.txt.gz
PGS003782
(HDL_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,155,488
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003782/ScoringFiles/PGS003782.txt.gz
PGS003806
(logTG_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003806/ScoringFiles/PGS003806.txt.gz
PGS003811
(logTG_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003811/ScoringFiles/PGS003811.txt.gz
PGS003816
(logTG_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003816/ScoringFiles/PGS003816.txt.gz
PGS003789
(LDL_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,155,363
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003789/ScoringFiles/PGS003789.txt.gz
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