Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS003793
(LDL_EAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,191,112
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003793/ScoringFiles/PGS003793.txt.gz
PGS003809
(logTG_EAS_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,189,464
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003809/ScoringFiles/PGS003809.txt.gz
PGS003810
(logTG_EAS_weighted_LDpred2)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,189,464
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003810/ScoringFiles/PGS003810.txt.gz
PGS003851
(CRC_PRS_EUR)
 PGP000294 |
Thomas M et al. Am J Hum Genet (2020)
 Colorectal cancer colorectal cancer 1,180,765
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003851/ScoringFiles/PGS003851.txt.gz
PGS004741
(BUN_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Urea urea measurement 1,178,386
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004741/ScoringFiles/PGS004741.txt.gz
PGS003373
(GSCAN_DrnkWk_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Drinks per week alcohol consumption quality 1,177,071
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003373/ScoringFiles/PGS003373.txt.gz
PGS004773
(Hct_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hematocrit hematocrit 1,176,938
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004773/ScoringFiles/PGS004773.txt.gz
PGS000894
(GLGC_2021_HIS_LDL_PRS_weights_PRS-CS)
 PGP000230 |
Graham SE et al. Nature (2021)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,175,595
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000894/ScoringFiles/PGS000894.txt.gz
PGS004755
(dbp_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Diastolic blood pressure diastolic blood pressure 1,172,953
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004755/ScoringFiles/PGS004755.txt.gz
PGS004785
(HTN_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Hypertension hypertension 1,170,615
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004785/ScoringFiles/PGS004785.txt.gz
PGS004855
(WBC_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 White blood cell count leukocyte quantity 1,165,158
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004855/ScoringFiles/PGS004855.txt.gz
PGS004821
(RBC_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Red blood cell count erythrocyte count 1,160,061
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004821/ScoringFiles/PGS004821.txt.gz
PGS002800
(GIANT_HEIGHT_YENGO_2022_PGS_WEIGHTS_SAS)
 PGP000382 |
Yengo L et al. Nature (2022)
 Height body height 1,156,741
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002800/ScoringFiles/PGS002800.txt.gz
PGS003772
(HDL_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,155,488
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003772/ScoringFiles/PGS003772.txt.gz
PGS003777
(HDL_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,155,488
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003777/ScoringFiles/PGS003777.txt.gz
PGS003782
(HDL_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,155,488
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003782/ScoringFiles/PGS003782.txt.gz
PGS003806
(logTG_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003806/ScoringFiles/PGS003806.txt.gz
PGS003811
(logTG_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003811/ScoringFiles/PGS003811.txt.gz
PGS003816
(logTG_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Log triglycerides triglyceride measurement 1,155,382
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003816/ScoringFiles/PGS003816.txt.gz
PGS003789
(LDL_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,155,363
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003789/ScoringFiles/PGS003789.txt.gz
PGS003794
(LDL_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,155,363
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003794/ScoringFiles/PGS003794.txt.gz
PGS003799
(LDL_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 LDL cholesterol low density lipoprotein cholesterol measurement 1,155,363
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003799/ScoringFiles/PGS003799.txt.gz
PGS003823
(TC_AFR_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,155,228
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003823/ScoringFiles/PGS003823.txt.gz
PGS003828
(TC_EAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,155,228
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003828/ScoringFiles/PGS003828.txt.gz
PGS003833
(TC_SAS_PRSCSx)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,155,228
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003833/ScoringFiles/PGS003833.txt.gz
PGS003445
(PRScsx_T2D_LAT_LATweights)
 PGP000445 |
Huerta-Chagoya A et al. Diabetologia (2023)
 Type 2 diabetes (T2D) type 2 diabetes mellitus 1,149,210
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003445/ScoringFiles/PGS003445.txt.gz
PGS004811
(Platelets_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Platelet count platelet count 1,147,733
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004811/ScoringFiles/PGS004811.txt.gz
PGS004237
(CAD_PRS_LDpred_UKB_Pub1)
 PGP000532 |
Manikpurage HD et al. Circ Genom Precis Med (2021)
 Coronary Artery Disease coronary artery disease 1,146,511
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004237/ScoringFiles/PGS004237.txt.gz
PGS003395
(PRScsx_CRC)
 PGP000414 |
Xin J et al. Genome Med (2023)
 Colorectal cancer colorectal cancer 1,145,689
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003395/ScoringFiles/PGS003395.txt.gz
PGS004860
(Genome-wide-PRS)
 PGP000607 |
Boumtje V et al. EBioMedicine (2024)
 Lung cancer lung carcinoma 1,143,554
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004860/ScoringFiles/PGS004860.txt.gz
PGS003380
(best_BRCA)
 PGP000413 |
Namba S et al. Cancer Res (2022)
 Breast cancer breast carcinoma 1,142,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003380/ScoringFiles/PGS003380.txt.gz
PGS005090
(CKD_PRS_AA)
 PGP000683 |
Jones AC et al. J Am Soc Nephrol (2024)
 Chronic kidney disease (stage 3 or higher) chronic kidney disease 1,142,436
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005090/ScoringFiles/PGS005090.txt.gz
PGS002254
(PRS_reported)
 PGP000280 |
Kujala UM et al. Med Sci Sports Exerc (2020)
 Physical activity (self-reported) physical activity measurement,
self-reported trait		 1,142,416
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002254/ScoringFiles/PGS002254.txt.gz
PGS004159
(UKBB_EnsPGS.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,141,659
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004159/ScoringFiles/PGS004159.txt.gz
PGS003988
(dbslmm.auto.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,141,637
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003988/ScoringFiles/PGS003988.txt.gz
PGS003989
(dbslmm.auto.GCST008059.eGFR)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 eGFR glomerular filtration rate 1,141,637
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003989/ScoringFiles/PGS003989.txt.gz
PGS002255
(PRS_measured)
 PGP000280 |
Kujala UM et al. Med Sci Sports Exerc (2020)
 Physical activity (measured) physical activity measurement 1,140,182
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002255/ScoringFiles/PGS002255.txt.gz
PGS004155
(UKBB_EnsPGS.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,139,693
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004155/ScoringFiles/PGS004155.txt.gz
PGS003985
(dbslmm.auto.GCST006085.Prostate_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Prostate cancer prostate carcinoma 1,139,671
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003985/ScoringFiles/PGS003985.txt.gz
PGS004156
(UKBB_EnsPGS.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,138,452
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004156/ScoringFiles/PGS004156.txt.gz
PGS003986
(dbslmm.auto.GCST007140.HDL)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 HDL cholesterol high density lipoprotein cholesterol measurement 1,138,429
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003986/ScoringFiles/PGS003986.txt.gz
PGS003983
(dbslmm.auto.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 1,137,459
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003983/ScoringFiles/PGS003983.txt.gz
PGS003992
(dbslmm.auto.GCST90012877.AD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Alzheimer's disease Alzheimer disease 1,136,212
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003992/ScoringFiles/PGS003992.txt.gz
PGS004158
(UKBB_EnsPGS.GCST008059.CKD)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Chronic kidney disease (CKD) chronic kidney disease 1,135,455
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004158/ScoringFiles/PGS004158.txt.gz
PGS004153
(UKBB_EnsPGS.GCST004988.Breast_cancer)
 PGP000517 |
Monti R et al. Am J Hum Genet (2024)
 Breast cancer breast carcinoma 1,133,268
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004153/ScoringFiles/PGS004153.txt.gz
PGS002811
(ASATadjbmi3_weights_select)
 PGP000391 |
Agrawal S et al. Nat Commun (2022)
 Abdominal adipose tissue volumes adjusted for BMI and height adipose amount 1,125,301
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002811/ScoringFiles/PGS002811.txt.gz
PGS002812
(GFATadjbmi3_weights_select)
 PGP000391 |
Agrawal S et al. Nat Commun (2022)
 Gluteofemoral adipose tissue volumes adjusted for BMI and height adipose amount 1,125,301
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002812/ScoringFiles/PGS002812.txt.gz
PGS002813
(VATadjbmi3_weights_select)
 PGP000391 |
Agrawal S et al. Nat Commun (2022)
 Visceral adipose tissue volumes adjusted for BMI and height visceral adipose tissue quantity 1,125,301
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002813/ScoringFiles/PGS002813.txt.gz
PGS003727
(GPS_CADEUR)
 PGP000466 |
Patel AP et al. Nat Med (2023)
 Coronary artery disease coronary artery disease 1,125,113
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003727/ScoringFiles/PGS003727.txt.gz
PGS003824
(TC_AFR_CTSLEB)
 PGP000489 |
Zhang H et al. Nat Genet (2023)
 Total cholesterol total cholesterol measurement 1,122,865
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003824/ScoringFiles/PGS003824.txt.gz
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