Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS002821
(ExPRSweb_AgeAtMenopause_ieu-a-1004_PT_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menopause age at menopause 159
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002821/ScoringFiles/PGS002821.txt.gz
PGS002822
(ExPRSweb_AgeAtMenopause_ieu-a-1004_PLINK_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menopause age at menopause 159
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002822/ScoringFiles/PGS002822.txt.gz
PGS002823
(ExPRSweb_AgeAtMenopause_ieu-a-1004_DBSLMM_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menopause age at menopause 1,379,304
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002823/ScoringFiles/PGS002823.txt.gz
PGS002824
(ExPRSweb_AgeAtMenopause_ieu-a-1004_PRSCS_UKB_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Age at menopause age at menopause 894,484
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002824/ScoringFiles/PGS002824.txt.gz
PGS001371
(GBE_INI2976)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Age diabetes diagnosed diabetes mellitus,
age at diagnosis		 26
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001371/ScoringFiles/PGS001371.txt.gz
PGS001938
(portability-PLR_log_age_first_sex)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age first had sexual intercourse age at first sexual intercourse measurement 64,164
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001938/ScoringFiles/PGS001938.txt.gz
PGS002156
(portability-ldpred2_log_age_first_sex)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age first had sexual intercourse age at first sexual intercourse measurement 972,919
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002156/ScoringFiles/PGS002156.txt.gz
PGS002215
(portability-ldpred2_no_sex)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age first had sexual intercourse age at first sexual intercourse measurement 633,660
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002215/ScoringFiles/PGS002215.txt.gz
PGS003520
(cont-decay-log_age_first_sex)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Age first had sexual intercourse age at first sexual intercourse measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003520/ScoringFiles/PGS003520.txt.gz
PGS001372
(GBE_INI22146)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Age hayfever or allergic rhinitis diagnosed by doctor allergic disease 255
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001372/ScoringFiles/PGS001372.txt.gz
PGS003361
(GSCAN_AgeSmk_2022_PRS_WEIGHTS_AFR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Age of smoking initiation age at initiation of smoking 1,193,754
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003361/ScoringFiles/PGS003361.txt.gz
PGS003362
(GSCAN_AgeSmk_2022_PRS_WEIGHTS_AMR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Age of smoking initiation age at initiation of smoking 1,073,689
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003362/ScoringFiles/PGS003362.txt.gz
PGS003363
(GSCAN_AgeSmk_2022_PRS_WEIGHTS_EAS)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Age of smoking initiation age at initiation of smoking 858,406
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003363/ScoringFiles/PGS003363.txt.gz
PGS003364
(GSCAN_AgeSmk_2022_PRS_WEIGHTS_EUR)
 PGP000410 |
Saunders GRB et al. Nature (2022)
 Age of smoking initiation age at initiation of smoking 1,055,960
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003364/ScoringFiles/PGS003364.txt.gz
PGS002269
(PRS47_AMD)
 PGP000299 |
Zekavat SM et al. Ophthalmology (2022)
 Age-related macular degeneration age-related macular degeneration 47
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002269/ScoringFiles/PGS002269.txt.gz
PGS004606
(AMD-IAMDGC-EUR)
 PGP000582 |
Gorman BR et al. medRxiv (2022)
|Pre		 Age-related macular degeneration age-related macular degeneration 1,000,946
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004606/ScoringFiles/PGS004606.txt.gz
PGS004607
(AMD-MVP-AFR)
 PGP000582 |
Gorman BR et al. medRxiv (2022)
|Pre		 Age-related macular degeneration age-related macular degeneration 1,067,520
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004607/ScoringFiles/PGS004607.txt.gz
PGS004952
(PRS52_AMD)
 PGP000673 |
Herold JM et al. Invest Ophthalmol Vis Sci (2023)
 Age-related macular degeneration age-related macular degeneration 52
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004952/ScoringFiles/PGS004952.txt.gz
PGS001373
(GBE_INI2217)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Age started wearing glasses or contact lenses eye measurement 8,870
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001373/ScoringFiles/PGS001373.txt.gz
PGS001374
(GBE_INI2897)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Age stopped smoking smoking cessation 663
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001374/ScoringFiles/PGS001374.txt.gz
PGS001915
(portability-PLR_F_menarche)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age when periods started (menarche) age at menarche 38,940
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001915/ScoringFiles/PGS001915.txt.gz
PGS002131
(portability-ldpred2_F_menarche)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Age when periods started (menarche) age at menarche 854,735
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002131/ScoringFiles/PGS002131.txt.gz
PGS003508
(cont-decay-F_menarche)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Age when periods started (menarche) age at menarche 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003508/ScoringFiles/PGS003508.txt.gz
PGS000218
(AGRP)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Agouti-related protein (AGRP) serum levels blood protein measurement 552,121
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000218/ScoringFiles/PGS000218.txt.gz
PGS001940
(portability-PLR_log_ALT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alanine aminotransferase serum alanine aminotransferase measurement 51,849
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001940/ScoringFiles/PGS001940.txt.gz
PGS002158
(portability-ldpred2_log_ALT)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Alanine aminotransferase serum alanine aminotransferase measurement 774,274
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002158/ScoringFiles/PGS002158.txt.gz
PGS003522
(cont-decay-log_ALT)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Alanine aminotransferase serum alanine aminotransferase measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003522/ScoringFiles/PGS003522.txt.gz
PGS004715
(ALT_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alanine aminotransferase serum alanine aminotransferase measurement 559,731
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004715/ScoringFiles/PGS004715.txt.gz
PGS004716
(ALT_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alanine aminotransferase serum alanine aminotransferase measurement 2,283,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004716/ScoringFiles/PGS004716.txt.gz
PGS004717
(ALT_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alanine aminotransferase serum alanine aminotransferase measurement 1,051,633
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004717/ScoringFiles/PGS004717.txt.gz
PGS004718
(ALT_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Alanine aminotransferase serum alanine aminotransferase measurement 2,283,693
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004718/ScoringFiles/PGS004718.txt.gz
PGS003342
(CVGRS_ALT)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Alanine aminotransferase level serum alanine aminotransferase measurement 51
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003342/ScoringFiles/PGS003342.txt.gz
PGS003351
(ALLGRS_ALT)
 PGP000405 |
Kim YJ et al. Nat Commun (2022)
 Alanine aminotransferase level serum alanine aminotransferase measurement 57
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003351/ScoringFiles/PGS003351.txt.gz
PGS004329
(X30620.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Alanine aminotransferase (U/L) serum alanine aminotransferase measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004329/ScoringFiles/PGS004329.txt.gz
PGS000668
(snpnet.Alanine_aminotransferase)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Alanine aminotransferase [U/L] serum alanine aminotransferase measurement 12,076
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000668/ScoringFiles/PGS000668.txt.gz - Check Terms/Licenses
PGS000816
(GRS150_ALT)
 PGP000201 |
Pazoki R et al. Nat Commun (2021)
 Alanine transaminase serum alanine aminotransferase measurement 150
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000816/ScoringFiles/PGS000816.txt.gz
PGS001886
(portability-PLR_albumin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Albumin serum albumin measurement 60,423
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001886/ScoringFiles/PGS001886.txt.gz
PGS002099
(portability-ldpred2_albumin)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Albumin serum albumin measurement 816,264
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002099/ScoringFiles/PGS002099.txt.gz
PGS004328
(X30600.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Albumin serum albumin measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004328/ScoringFiles/PGS004328.txt.gz
PGS004707
(Albumin_PRSmix_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Albumin serum albumin measurement 589,303
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004707/ScoringFiles/PGS004707.txt.gz
PGS004708
(Albumin_PRSmix_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Albumin serum albumin measurement 2,071,924
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004708/ScoringFiles/PGS004708.txt.gz
PGS004709
(Albumin_PRSmixPlus_eur)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Albumin serum albumin measurement 2,659,200
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004709/ScoringFiles/PGS004709.txt.gz
PGS004710
(Albumin_PRSmixPlus_sas)
 PGP000604 |
Truong B et al. Cell Genom (2024)
 Albumin serum albumin measurement 2,071,924
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004710/ScoringFiles/PGS004710.txt.gz
PGS000669
(snpnet.Albumin)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Albumin [g/L] serum albumin measurement 11,912
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000669/ScoringFiles/PGS000669.txt.gz - Check Terms/Licenses
PGS004913
(PRSALC)
 PGP000645 |
Schwantes-An TH et al. Hepatol Commun (2024)
 Alcohol-associated liver cirrhosis alcoholic liver cirrhosis 20
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004913/ScoringFiles/PGS004913.txt.gz
PGS001086
(GBE_BIN100580)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Alcohol consumption alcohol consumption measurement 1,028
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001086/ScoringFiles/PGS001086.txt.gz
PGS002825
(ExPRSweb_Alcohol_20403_LASSOSUM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 375,749
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002825/ScoringFiles/PGS002825.txt.gz
PGS002826
(ExPRSweb_Alcohol_20403_PT_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 19
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002826/ScoringFiles/PGS002826.txt.gz
PGS002827
(ExPRSweb_Alcohol_20403_PLINK_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 25
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002827/ScoringFiles/PGS002827.txt.gz
PGS002828
(ExPRSweb_Alcohol_20403_DBSLMM_MGI_20211120)
 PGP000393 |
Ma Y et al. Am J Hum Genet (2022)
 Alcohol consumption alcohol consumption measurement 5,498,032
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002828/ScoringFiles/PGS002828.txt.gz
Showing 51 to 100 of 5022 rows