Polygenic Scores (PGS)

Filter PGS by Participant Ancestry
Individuals included in:
G - Source of Variant Associations (GWAS)
D - Score Development/Training
E - PGS Evaluation
List of ancestries includes:
Display options:
Ancestry legend
Multi-ancestry (including European)
Multi-ancestry (excluding European)
African
East Asian
South Asian
Additional Asian Ancestries
European
Greater Middle Eastern
Hispanic or Latin American
Additional Diverse Ancestries
Not Reported
Polygenic Score ID & Name PGS Publication ID (PGP) Reported Trait Mapped Trait(s) (Ontology) Number of Variants Ancestry distribution
GWAS
Dev
Eval
 Scoring File (FTP Link)
PGS000962
(GBE_HC942)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Chronic ischaemic heart disease (time-to-event) Myocardial Ischemia 2,168
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000962/ScoringFiles/PGS000962.txt.gz
PGS002732
(GRS_77)
 PGP000341 |
Vujkovic M et al. Nat Genet (2022)
 Chronic elevation of alanine aminotransferase serum alanine aminotransferase amount 77
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002732/ScoringFiles/PGS002732.txt.gz
PGS004926
(Back_3000)
 PGP000661 |
Tsepilov YA et al. J Pers Med (2023)
 Chronic back pain Back pain 1,090,574
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004926/ScoringFiles/PGS004926.txt.gz
PGS001850
(portability-PLR_496)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Chronic airway obstruction chronic obstructive pulmonary disease 7,347
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001850/ScoringFiles/PGS001850.txt.gz
PGS002062
(portability-ldpred2_496)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Chronic airway obstruction chronic obstructive pulmonary disease 811,003
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002062/ScoringFiles/PGS002062.txt.gz
PGS000677
(snpnet.Cholesterol_adjstatins)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Cholesterol [mmol/L] (statin adjusted) total cholesterol measurement 17,204
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000677/ScoringFiles/PGS000677.txt.gz - Check Terms/Licenses
PGS004333
(X30690.score)
 PGP000561 |
Jung H et al. Commun Biol (2024)
 Cholesterol (mmol/L) total cholesterol measurement 1,059,939
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004333/ScoringFiles/PGS004333.txt.gz
PGS000192
(GS9)
 PGP000079 |
Kathiresan S et al. N Engl J Med (2008)
 Cholesterol low density lipoprotein cholesterol measurement,
high density lipoprotein cholesterol measurement		 9
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000192/ScoringFiles/PGS000192.txt.gz
PGS001895
(portability-PLR_cholesterol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholesterol total cholesterol measurement 16,576
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001895/ScoringFiles/PGS001895.txt.gz
PGS002108
(portability-ldpred2_cholesterol)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholesterol total cholesterol measurement 451,160
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002108/ScoringFiles/PGS002108.txt.gz
PGS003495
(cont-decay-cholesterol)
 PGP000457 |
Ding Y et al. bioRxiv (2022)
|Pre		 Cholesterol total cholesterol measurement 979,739
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003495/ScoringFiles/PGS003495.txt.gz
PGS001174
(GBE_HC1125)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cholelithiasis (time-to-event) cholelithiasis 970
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001174/ScoringFiles/PGS001174.txt.gz
PGS001861
(portability-PLR_574)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholelithiasis and cholecystitis cholelithiasis,
Cholecystitis		 2,059
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001861/ScoringFiles/PGS001861.txt.gz
PGS002072
(portability-ldpred2_574)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cholelithiasis and cholecystitis cholelithiasis,
Cholecystitis		 428,587
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002072/ScoringFiles/PGS002072.txt.gz
PGS005150
(Cholelithiasis (PRS-CSx; EAS+EUR))
 PGP000704 |
Jung HU et al. Commun Biol (2025)
 Cholelithiasis cholelithiasis 908,465
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005150/ScoringFiles/PGS005150.txt.gz
PGS000943
(GBE_HC1126)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cholecystitis (time-to-event) Cholecystitis 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000943/ScoringFiles/PGS000943.txt.gz
PGS000707
(HC225)
 PGP000128 |
Sinnott-Armstrong N et al. Nat Genet (2021)
 Cholecystitis Cholecystitis 183,329
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000707/ScoringFiles/PGS000707.txt.gz - Check Terms/Licenses
PGS000942
(GBE_HC225)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cholecystitis Cholecystitis 391
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000942/ScoringFiles/PGS000942.txt.gz
PGS000224
(CHI3L1)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Chitinase-3-like protein 1 (CHI3L1) serum levels blood protein amount 552,106
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000224/ScoringFiles/PGS000224.txt.gz
PGS002317
(repro_ChildLess.BOLT-LMM)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 1,109,311
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002317/ScoringFiles/PGS002317.txt.gz
PGS002389
(repro_ChildLess.P+T.0.0001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 1,578
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002389/ScoringFiles/PGS002389.txt.gz
PGS002438
(repro_ChildLess.P+T.0.001)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 10,891
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002438/ScoringFiles/PGS002438.txt.gz
PGS002487
(repro_ChildLess.P+T.0.01)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 86,054
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002487/ScoringFiles/PGS002487.txt.gz
PGS002536
(repro_ChildLess.P+T.1e-06)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 53
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002536/ScoringFiles/PGS002536.txt.gz
PGS002585
(repro_ChildLess.P+T.5e-08)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 12
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002585/ScoringFiles/PGS002585.txt.gz
PGS002634
(repro_ChildLess.PolyFun-pred)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 176,147
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002634/ScoringFiles/PGS002634.txt.gz
PGS002683
(repro_ChildLess.SBayesR)
 PGP000332 |
Weissbrod O et al. Nat Genet (2022)
 Childless reproductive behavior trait 954,898
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002683/ScoringFiles/PGS002683.txt.gz
PGS001257
(GBE_INI1737)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Childhood sunburn sunburn 519
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001257/ScoringFiles/PGS001257.txt.gz
PGS003354
(SSNS-GRS)
 PGP000407 |
Downie ML et al. Pediatr Nephrol (2022)
 Childhood steroid-sensitive nephrotic syndrome nephrotic syndrome 5
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003354/ScoringFiles/PGS003354.txt.gz
PGS002248
(PRSice_asthma)
 PGP000275 |
Kothalawala DM et al. J Pers Med (2022)
 Childhood asthma childhood onset asthma 105
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002248/ScoringFiles/PGS002248.txt.gz
PGS001060
(GBE_QT_FC1001408)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cheese intake diet measurement 6,678
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001060/ScoringFiles/PGS001060.txt.gz
PGS004613
(PRSCHARGE_AF)
 PGP000591 |
Wang X et al. Circ Genom Precis Med (2023)
 CHARGE-AF predicted 5-year risk of atrial fibrillation atrial fibrillation 1,117,400
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004613/ScoringFiles/PGS004613.txt.gz
PGS000073
(CC_Cervix)
 PGP000050 |
Graff RE et al. Nat Commun (2021)
 Cervical cancer cervical carcinoma 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000073/ScoringFiles/PGS000073.txt.gz
PGS000784
(CC_Cervix_IV)
 PGP000186 |
Kachuri L et al. Nat Commun (2020)
 Cervical cancer cervical carcinoma 10
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000784/ScoringFiles/PGS000784.txt.gz
PGS001299
(GBE_cancer1041)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cervical cancer cervical carcinoma 24
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001299/ScoringFiles/PGS001299.txt.gz
PGS003389
(best_CESC)
 PGP000413 |
Namba S et al. Cancer Res (2022)
 Cervical cancer cervical carcinoma 2,814
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003389/ScoringFiles/PGS003389.txt.gz
PGS003428
(Ldpred_CC_170223)
 PGP000435 |
Koel M et al. Hum Mol Genet (2023)
 Cervical cancer cervical carcinoma 2,894,555
https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS003428/ScoringFiles/PGS003428.txt.gz
PGS005165
(PRS-CC)
 PGP000711 |
Zhu M et al. PLoS Med (2025)
 Cervical cancer cervical carcinoma 15
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS005165/ScoringFiles/PGS005165.txt.gz
PGS002053
(portability-ldpred2_433)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Cerebrovascular disease cerebrovascular disorder 599,726
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002053/ScoringFiles/PGS002053.txt.gz
PGS001059
(GBE_BIN_FC50001468)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cereal consumption (other) diet measurement 1,286
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001059/ScoringFiles/PGS001059.txt.gz
PGS001058
(GBE_BIN_FC20001468)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cereal consumption (biscuit cereal) diet measurement 146
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001058/ScoringFiles/PGS001058.txt.gz
PGS001057
(GBE_INI1458)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Cereal consumption diet measurement 4,882
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001057/ScoringFiles/PGS001057.txt.gz
PGS001300
(GBE_BIN21068)
 PGP000244 |
Tanigawa Y et al. PLoS Genet (2022)
 Celiac disease or gluten sensitivity, diagnosed celiac disease 9
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001300/ScoringFiles/PGS001300.txt.gz
PGS001856
(portability-PLR_557.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Celiac disease celiac disease 1,661
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS001856/ScoringFiles/PGS001856.txt.gz
PGS002067
(portability-ldpred2_557.1)
 PGP000263 |
Privé F et al. Am J Hum Genet (2022)
 Celiac disease celiac disease 58,231
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS002067/ScoringFiles/PGS002067.txt.gz
PGS004930
(celiac_disease_snpnet_combined)
 PGP000665 |
Moreno-Grau S et al. Human Genomics (2024)
 Celiac disease celiac disease 463
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS004930/ScoringFiles/PGS004930.txt.gz
PGS000222
(CCL4)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 C-C motif chemokine 4 (CCL4) serum levels blood protein amount 552,214
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000222/ScoringFiles/PGS000222.txt.gz
PGS000221
(CCL3)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 C-C motif chemokine 3 (CCL3) serum levels blood protein amount 552,347
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000221/ScoringFiles/PGS000221.txt.gz
PGS000220
(CCL20)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 C-C motif chemokine 20 (CCL20) serum levels blood protein amount 551,989
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000220/ScoringFiles/PGS000220.txt.gz
PGS000228
(CTSL1)
 PGP000089 |
Folkersen L et al. Nat Metab (2020)
 Cathepsin L1 (CTSL1) serum levels blood protein amount 552,084
-
 https://ftp.ebi.ac.uk/pub/databases/spot/pgs/scores/PGS000228/ScoringFiles/PGS000228.txt.gz
Showing 4301 to 4350 of 5198 rows